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MetaPhlAn Analysis and Database Customization for Soil Samples
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0
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67
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July 8, 2025
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Missing Legend in Lefse Cladogram Plot Generated via Conda Environment
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0
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45
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July 7, 2025
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Feature request: allow to put fraction with some parameters
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0
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13
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July 4, 2025
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Feature request: phylophlan_write_config_file, force generation of config, despite the lack of a program at PATH
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0
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31
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July 4, 2025
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Question about the unclassified estiamtion
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1
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113
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July 2, 2025
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Question about reproducing a previous metaphlan3 run
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3
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35
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July 2, 2025
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Ethiopian tutorial error
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1
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69
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July 2, 2025
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Metaphlan: error: unrecognized arguments: --bowtie2db
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1
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167
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July 2, 2025
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Metaphlan database has duplicate entries, causing downstream failures
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1
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33
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July 1, 2025
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Can't download the Ethiopian genome bins（Ethiopian MAGs））
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0
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25
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June 30, 2025
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HUMAnN 4.0.0.alpha.1 calls "old" metaphlan command-line args
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1
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196
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June 30, 2025
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Humann 4 cant work with metaphlan 4
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1
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540
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June 30, 2025
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CRITICAL: Can not find file sample_616_metaphlan_bugs_list.tsv
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5
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378
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June 30, 2025
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How to skip alignment step and use pre-aligned core genes for phylogeny?
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0
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19
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June 30, 2025
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MaAsLin3 conda request
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7
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103
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June 27, 2025
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Shortbred default parameter inconsistency
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1
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54
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June 27, 2025
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StrainPhlan tutorial typo
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0
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58
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June 26, 2025
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Kneaddata tar of human_genome uncompresses in subdirectory
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2
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56
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June 25, 2025
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Unable to run example 1
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7
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838
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June 23, 2025
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Waafle for diatoms
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0
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12
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June 23, 2025
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Connect Pathways to Uniref90 Gene Families IDs to Gene Families
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2
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221
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June 20, 2025
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Question About HUMAnN Output Filtering for SGB-Level Contributions
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1
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44
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June 20, 2025
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Baqlava marker file has markers not seen in the profile
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1
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57
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June 20, 2025
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StrainPhlan tutorial error - cannot add metadata to tree
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0
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33
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June 18, 2025
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Trying to understand coef column (and how to convert it to fold change)
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17
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4114
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June 19, 2025
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Phylophlan questions
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0
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31
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June 19, 2025
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Error message Maaslin3
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3
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93
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June 18, 2025
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[e] gene_markers_identification crashed
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0
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19
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June 18, 2025
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MaAsLin2: Comparing results with one fixed effect vs many
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1
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123
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June 18, 2025
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MaAslin2 Question about gFC calculation and interpretation
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1
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68
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June 16, 2025
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