Microbial community profiling WAAFLE
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Announcing WAAFLE 1.5
WAAFLE 1.5 has been updated to utilize the chocophlan.v202210_202403 SGB database, which is compatible with all bioBakery 4 tools utilizing SGB pangenomes (e.g., MetaPhlAn4 and HUMAnN4, see details MetaPhlAn 4.2.2 releas… |
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1 | 42 | February 26, 2026 |
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About the WAAFLE v1.0.0 category
Name: WAAFLE User manual || Tutorial Description: Lateral gene transfer (LGT) is an important mechanism for genome diversification in microbial communities, including the human microbiome. While methods exist to id… |
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1 | 324 | August 9, 2023 |
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How to define a 'HGT gene'?
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1 | 8 | February 10, 2026 |
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Question on quantifying the LGT events in waafle
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7 | 567 | February 9, 2026 |
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Waafle for diatoms
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0 | 12 | June 23, 2025 |
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Error Using --write-details in waafle_orgscorer (WAAFLE Tutorial Step 3)
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0 | 11 | May 8, 2025 |
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increasing the default parameter `threads` value
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1 | 43 | February 13, 2025 |
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Error when running waafle_junctions with --sam flag
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4 | 50 | November 14, 2024 |
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How to get "taxonomy.tsv" using a self-built database
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7 | 150 | August 23, 2024 |
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Producing figures and quantifying HGT
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0 | 68 | July 5, 2024 |
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Waafle_junctions: _csv.Error: field larger than field limit (131072)
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2 | 60 | June 22, 2024 |
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Lateral gene transfer events
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2 | 251 | March 26, 2024 |
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Question on Calculating LGT rates
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0 | 224 | November 2, 2023 |
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Question on download of waafledb_taxonomy.tsv
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2 | 231 | October 21, 2023 |
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Question on conducting waafle_junctions.py by single-end read
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3 | 334 | October 11, 2023 |
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Unable to use the WAALFE database
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8 | 755 | September 21, 2021 |
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Bad subject id header
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8 | 562 | June 19, 2020 |