The bioBakery help forum

Question on quantifying the LGT events in waafle

Hi~, I have gone through all the steps within waafle and I am wondering how to get the quantified LGT events within one sample. Thanks!

Xinming

I feel like counting the row records in *.lgt.tsv or *.lgt.tsv.qc_pass(after junctions & quality control) should be the solution. But how to do the normalization by the assembled genes? (I used the default reference database in waafle)