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About the Microbial community profiling category
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0
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869
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November 12, 2019
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Dereplicating and normalizing reads for humann and metaphlan
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3
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37
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January 22, 2026
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Unable to download ChocoPhlAn and UniRef databases (connection error)
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0
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3
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January 21, 2026
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Discrepancy between estimated_number_of_reads_from_the_clade and the relative_abundance
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0
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7
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January 20, 2026
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How long does it usually take to build a phylogenetic tree with PhyloPhlAn 3 using about 30 genomes?
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0
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2
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January 17, 2026
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Glitch in humann4 genefamilies file creation
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0
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11
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January 15, 2026
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Quality control of MetaPhlAn4 count table
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1
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17
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January 15, 2026
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No SGBs in humann3.9 genefamily.tsv
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2
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24
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January 12, 2026
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Pathway abundance stratification
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0
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20
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January 9, 2026
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How to handle transferred and split EC numbers in humann outputs
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1
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14
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January 9, 2026
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HUMAnN targeted functional analysis?
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2
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45
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January 9, 2026
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Humann (v3.9) returning 100% unaligned reads on demo data
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1
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18
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January 9, 2026
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HUMAnN4 Support for MetaPhlAn vJan25 Database
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1
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65
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January 9, 2026
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VFDB marker details
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0
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5
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January 8, 2026
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SGB identifiers in different versions of Metaphlan database
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0
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22
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December 22, 2025
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Strainphlan sample2markers.py ERROR
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5
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46
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December 18, 2025
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Question about ICTV taxonomy version and naming in BaqLaVa
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1
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11
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December 17, 2025
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SGB Newick file labels
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2
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52
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December 16, 2025
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Sgb_to_gtdb_profile.py keep read count estimation from -t rel_ab_w_read_stats
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9
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475
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December 12, 2025
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Feature request: Include taxonomy columns for baqlava_join_table utility script
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1
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26
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December 11, 2025
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Very-sensitive-local preset and unclassified reads in non-human gut samples
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0
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14
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December 11, 2025
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HUMAnN 4 database downloads inaccessible due to Globus (data.globus.org) domain blocking
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2
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40
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December 9, 2025
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Humann3 Database errors
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7
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68
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December 8, 2025
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HUMAnN (v3.6) a new db update issue - CHOCOPhlAnSGB_202103
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6
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157
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December 7, 2025
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How to silence database download message from Metaphlan 4.0.6 within Humann 3.8
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4
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135
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December 7, 2025
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HUMAnN 4 prescreen issue and input file format clarification
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2
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36
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December 7, 2025
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Combine Output from Separate Runs of Single Sample
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3
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29
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December 5, 2025
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Trouble running HUMAnN with updated metaphlan database
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3
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183
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December 5, 2025
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Humann4 not recognizing relab column in metaphlan4 table
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1
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41
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December 5, 2025
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Zero community-level pathways detected despite gene families present
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1
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47
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December 5, 2025
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