Microbial community profiling

HUMAnN Name: HUMAnN User manual || Tutorial PhyloPhlAn Name: PhyloPhlAn User manual || Tutorial MACARRoN Name: MACARRoN MetaPhlAn Name: MetaPhlAn User manual || Tutorial PanPhlAn Name: PanPhlAn User manual || Tutorial PPANINI Name: PPANINI User manual || Tutorial WAAFLE Name: WAAFLE User manual || Tutorial MetaWIBELE Name: MetaWIBELE User manual || Tutorial ShortBRED Name: ShortBRED User manual || Tutorial StrainPhlAn Name: StrainPhlAn User manual || Tutorial MelonnPan Name: MelonnPan User manual || Tutorial PICRUSt Name: PICRUSt User manual || Tutorial

Topic	Replies	Views	Activity
About the Microbial community profiling category Microbial community profiling	0	238	November 12, 2019
Error while removing intermediate files are the end of 16s pipeline PICRUSt	0	2	January 17, 2022
Merge_metaphlan_tables.py with rel_ab_w_read_stats MetaPhlAn	2	134	January 16, 2022
Obtain taxonomy for marker_ab_table MetaPhlAn	0	14	January 15, 2022
Strainphlan sample2markers.py AttributeError: 'NoneType' object has no attribute 'reference_free_consensus' StrainPhlAn	4	75	January 14, 2022
Default minimum read length change MetaPhlAn	2	18	January 13, 2022
Metaphlan3 using mouse gut samples MetaPhlAn	1	8	January 12, 2022
Phylophlan Tree of Life Differences PhyloPhlAn	2	59	January 12, 2022
Precomputed SHORTBRED markers for dbCAN? ShortBRED	0	3	January 11, 2022
Customizing Chochophlan panproteome and Metaphlan marker gene databases with new taxa MetaPhlAn	5	87	January 11, 2022
Core microbiome species MetaPhlAn	3	30	January 11, 2022
Parameters for short reads (100 bp) MetaPhlAn	2	26	January 11, 2022
Humann3 database download Error HUMAnN	0	15	January 10, 2022
Error：customizing the database MetaPhlAn	4	72	January 6, 2022
Installing MetaPhlAn on Pc/windows MetaPhlAn	1	17	January 6, 2022
Marker gene length MetaPhlAn	1	28	January 6, 2022
Error while running MetaPhlAn MetaPhlAn	2	94	January 6, 2022
High Unknown estimation in soil sample almost 80 % MetaPhlAn	1	54	January 6, 2022
Understand Additional type -t parameters MetaPhlAn	1	19	January 6, 2022
Swtiching from uniref90 to uniref 50 with only unclassified reads HUMAnN	0	11	January 5, 2022
ShortBRED identify gives no markers ShortBRED	3	83	January 4, 2022
Handling Paired-End Reads in ShortBRED ShortBRED	2	36	January 4, 2022
Merge_metaphlan_tables.py UnboundLocalError MetaPhlAn	2	379	January 3, 2022
MetaPhlAn rules to include or to not include a clade in the composition based on --perc_nonzero, --stat_q, and --avoid_disqm MetaPhlAn	3	39	January 3, 2022
Bug in humann_genefamilies genus_level HUMAnN	0	25	January 1, 2022
Humann3 zero species selected from prescreen HUMAnN	3	72	December 31, 2021
Softwares for statistitical analysis of MetaPhlAn output MetaPhlAn	1	219	December 30, 2021
Pathway coverage issue from humann2 HUMAnN	1	146	December 28, 2021
Question on conducting waafle_junctions.py by single-end read WAAFLE	0	17	December 27, 2021
Question on quantifying the LGT events in waafle WAAFLE	1	25	December 27, 2021