About the Microbial community profiling category
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0
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588
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November 12, 2019
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Humann output normalized by Metaphlan output
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0
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14
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December 1, 2023
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Combine HUMAnN gene families file for MaAsLin
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2
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50
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November 30, 2023
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Diamond (v2.1.8) reported a fatal error when running humann (v3.8)
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0
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27
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November 30, 2023
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What is the best version of the HUMAnN tool?
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1
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32
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November 29, 2023
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No metaphlan_profile file was created
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3
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74
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November 29, 2023
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Humans database
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3
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37
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November 29, 2023
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HUMAnN filter out non-bacterial pathways and genes
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1
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61
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November 29, 2023
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Should I first renorm gene_family to CPM and then regroup to pathway or on the contrary?
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4
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511
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November 29, 2023
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Identical values of different RXN number (with the same gene family)
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3
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67
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November 29, 2023
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Query on Statistical Analysis Methods in HUMAnN3 Papers [DOI: 10.1038/s41564-018-0306-4]
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2
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24
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November 29, 2023
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[Issue] --nreads parameter when running MetaPhlAn using SAM files as input
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0
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23
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November 29, 2023
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Too many SGB or other unclassified species when processing mouse metagenomic samples
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1
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117
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November 28, 2023
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MetaPhlAn 4 ignore_markers help
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2
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160
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November 28, 2023
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Ignore_markers how to use
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0
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24
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November 28, 2023
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Metaphlan4 estimated_number_of_reads
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0
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43
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November 24, 2023
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Run Metaphlan offline
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2
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399
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November 23, 2023
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MetaPhlan 3.0.9 internet and permission issues when connecting via proxy server
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0
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28
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November 22, 2023
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MetaPhlAn 4 published + database update
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15
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2443
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November 22, 2023
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Difficulty downloading databases in humann3
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34
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4390
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November 20, 2023
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Duplicated fasta entries in pangenomes
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2
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30
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November 16, 2023
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Encountering an error in sample2markers.py -i SRS013951.sam.bz2 -o pkl_files/
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4
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134
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November 11, 2023
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Question about calculate_diversity.R
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2
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271
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November 11, 2023
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Inquiry on custom chocophlan database
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2
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53
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November 10, 2023
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Problems with Eggnog renaming from grouped table
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1
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52
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November 10, 2023
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Humann3 creating many bowtie2 index files in the temp dir
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1
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90
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November 10, 2023
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Question on quantifying the LGT events in waafle
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3
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288
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November 10, 2023
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HumanN 4 release date
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8
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873
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November 10, 2023
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A large number of "Taxon not in mapping file" appeared when analyzing the gut microbes of mice,
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4
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129
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November 10, 2023
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High proportion of Unmapped reads in metagenomic data
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6
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152
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November 10, 2023
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