Microbial community profiling

HUMAnN Name: HUMAnN User manual || Tutorial PPANINI Name: PPANINI User manual || Tutorial PanPhlAn Name: PanPhlAn User manual || Tutorial MetaWIBELE Name: MetaWIBELE User manual || Tutorial WAAFLE Name: WAAFLE User manual || Tutorial MetaPhlAn Name: MetaPhlAn User manual || Tutorial ShortBRED Name: ShortBRED User manual || Tutorial PICRUSt Name: PICRUSt User manual || Tutorial MelonnPan Name: MelonnPan User manual || Tutorial StrainPhlAn Name: StrainPhlAn User manual || Tutorial PhyloPhlAn Name: PhyloPhlAn User manual || Tutorial

Topic	Replies	Views	Activity
About the Microbial community profiling category Microbial community profiling	0	117	November 12, 2019
Diversity missing in profile output MetaPhlAn	0	3	January 27, 2021
Low percentage of aligned reads HUMAnN	16	1097	January 26, 2021
Problem with adding a new marker to Metaphlan DB MetaPhlAn	0	4	January 26, 2021
Tutorial is listing the wrong docker container StrainPhlAn	0	4	January 26, 2021
Smoothing DNA-level features to avoid divide-by-zero errors HUMAnN	2	19	January 26, 2021
raxmlHPC failed: [e] refine_gene_tree crashed PhyloPhlAn	10	10	January 26, 2021
Is there a way to use phylophlan_metagenomic with the phylophlan database? PhyloPhlAn	1	12	January 26, 2021
Rarefy metagenome sequence data before MetaPhlAn3 analysis MetaPhlAn	6	216	January 25, 2021
PanPhlAn_pangenome_exporter issue while writing .tsv PanPhlAn	7	22	January 25, 2021
Deciding how the genefamilies table is produced HUMAnN	2	18	January 25, 2021
Kegg on Humann2 HUMAnN	13	974	January 25, 2021
Can I run output from Illumina genome Analyser II, IIx and Illumina Hiseq 2000 with MetaPhlAn and HUMAnN and compare the output? HUMAnN	1	18	January 25, 2021
Humann2_renorm_table HUMAnN	3	189	January 25, 2021
Metaphlan2 is available, but humann2 has errors HUMAnN	2	81	January 23, 2021
Running calculate_unifrac.R ignores first sample MetaPhlAn	0	13	January 22, 2021
MetaPhlAn 3 urllib.error.URLError MetaPhlAn	3	15	January 22, 2021
MetaPhlAn3 error with 2 string number MetaPhlAn	2	17	January 22, 2021
How do I get the v30 database? HUMAnN	1	15	January 22, 2021
Obtain $sample_genefamilies.tsv not normalized by RPKs HUMAnN	2	18	January 21, 2021
PanPhlAn_pangenome_exporter uniref uniref_annotator diamond issue PanPhlAn	3	13	January 21, 2021
Strainphlan sample2markers.py no module named cmseq StrainPhlAn	6	33	January 21, 2021
Explanation of the output of phylophlan_metagenomic PhyloPhlAn	2	16	January 21, 2021
Discrepancies in analysis Microbial community profiling	0	5	January 21, 2021
Pre-downloading PhyloPhlAn databases? PhyloPhlAn	1	14	January 21, 2021
Error running FastTreeMP step PhyloPhlAn	5	47	January 21, 2021
ZeroDivisionError message - version 3.07 MetaPhlAn	0	5	January 20, 2021
Error: Unable to find the mpa_pkl file at: mpa_pklExiting MetaPhlAn	2	11	January 20, 2021
PhyloPhlAn Crash------- PhyloPhlAn	2	129	January 20, 2021
Unable to install metaphlan using docker image MetaPhlAn	6	84	January 20, 2021