Microbial community profiling

HUMAnN Name: HUMAnN User manual || Tutorial MetaPhlAn Name: MetaPhlAn User manual || Tutorial PPANINI Name: PPANINI User manual || Tutorial PanPhlAn Name: PanPhlAn User manual || Tutorial MetaWIBELE Name: MetaWIBELE User manual || Tutorial WAAFLE Name: WAAFLE User manual || Tutorial ShortBRED Name: ShortBRED User manual || Tutorial MelonnPan Name: MelonnPan User manual || Tutorial PICRUSt Name: PICRUSt User manual || Tutorial PhyloPhlAn Name: PhyloPhlAn User manual || Tutorial StrainPhlAn Name: StrainPhlAn User manual || Tutorial

Topic	Replies	Views	Activity
About the Microbial community profiling category Microbial community profiling	0	126	November 12, 2019
Strainphlan question on get the strain info StrainPhlAn	0	5	March 5, 2021
Conceptual Gap?: diversity metrics from metaphlan metagenomic output MetaPhlAn	2	12	March 5, 2021
CRITICAL ERROR: Can not find file metaphlan_bugs_list.tsv HUMAnN	5	26	March 4, 2021
Pre-Trained and Predicted MelonnPan with paired 16S and KO (PICRUST2) MelonnPan	4	23	March 4, 2021
100 Unknown raw reads MetaPhlAn	5	420	March 4, 2021
Tutorial; guidance on vizualisation PanPhlAn	0	5	March 4, 2021
How to set min_alignment_len MetaPhlAn	1	21	March 4, 2021
Custom databases usage HUMAnN	0	8	March 2, 2021
Humann3 Paired end reads HUMAnN	4	286	March 3, 2021
Error: Unable to find the mpa_pkl file at: mpa_pklExiting MetaPhlAn	4	48	February 19, 2021
HUMANN2 / HUMANN2 ground truth values HUMAnN	3	44	March 2, 2021
No MetaPhlAn BowTie2 database found (--index option)! HUMAnN	3	30	March 1, 2021
Percentage mapped reads in RPK or raw read count? HUMAnN	1	11	March 1, 2021
Humann 3.0 and bowtie metaphlan output HUMAnN	3	371	March 1, 2021
Hclust2.py error distance matrix finite values MetaPhlAn	0	12	March 1, 2021
Version for grouping databases HUMAnN	1	13	February 26, 2021
MetaPhlAn Database Issue MetaPhlAn	11	54	February 26, 2021
Eggnog ID in uniref_eggnog but not map_eggnog_names HUMAnN	4	89	February 26, 2021
Metaphlan3 installation fails MetaPhlAn	23	1581	February 25, 2021
An error in metagenemark Microbial community profiling	0	14	February 25, 2021
Melonpann installation MelonnPan	1	15	February 24, 2021
Normalize output? MelonnPan	4	21	February 24, 2021
Synthetic human gut metagenome HUMAnN	2	29	February 23, 2021
Biopython, pip and Python-2 deprecation ShortBRED	1	15	February 22, 2021
Is it necessary to run trimmomatic before HUMAnN? My read number decreased from around 10000000 to 7000000 in forward read and 2000000 in reverse read HUMAnN	11	348	August 29, 2020
Is long computation time in humann3 related to not using knead data? HUMAnN	1	33	February 18, 2021
Shortbred error 0 reads in file ShortBRED	0	11	February 17, 2021
ZeroDivisionError message - version 3.07 MetaPhlAn	3	35	February 17, 2021
MetaPhlAn3 gives only bacterial profile MetaPhlAn	1	33	February 17, 2021