Latest Microbial community profiling topics

Topic	Replies	Views	Activity
Phylophlan questions PhyloPhlAn	0	7	June 19, 2025
[e] gene_markers_identification crashed PhyloPhlAn	0	3	June 18, 2025
MetaPhlAn 4.2.2 --profile_vsc MetaPhlAn	2	28	June 18, 2025
Metaphlan no taxa MetaPhlAn	2	38	June 16, 2025
Uniref90 Gene Families to Pathways HUMAnN	3	1046	June 16, 2025
Combine metaphlan and humann HUMAnN	2	46	June 15, 2025
Humans database HUMAnN	15	434	June 13, 2025
Reaction to Pathways HUMAnN	1	48	June 13, 2025
[e] No alignments found to concatenate PhyloPhlAn	4	583	June 13, 2025
MetaPhlAn Databases MetaPhlAn	1	31	June 13, 2025
HUMAnN 3.8 - How to get taxonomic results at the order level instead of genus? HUMAnN	4	75	June 13, 2025
MetaPhlAn 4.2.2 release (initial long-read sequencing support and database update) MetaPhlAn Announcement We are pleased to share that MetaPhlAn 4.2.2 is now available, which incorporates taxonomic profiling of long-read metagenomes for the first time and includes a new version of the MetaPhlAn database (vJan25_…	2	685	June 11, 2025
Mock Community & Gut Microbiome Benchmarking Microbial community profiling	2	50	June 10, 2025
MetaPhlan4 drastically underestimate the abundance of Bacillus_subtilis\|t__SGB7788 MetaPhlAn	6	518	June 10, 2025
Metaphlan: sgb_to_gtdb_profile.py fails with KeyError MetaPhlAn	1	25	June 10, 2025
Understanding RPK values HUMAnN	3	59	June 9, 2025
Metaphlan3 relative abundance MetaPhlAn	14	7037	June 9, 2025
MACARRoN Capacity to Perform Differential Abundance Testing MACARRoN	1	17	June 2, 2025
Output Depends on Read Order Due to Ambiguous Protein Length Assignment in `blastx_coverage()` HUMAnN	2	35	June 1, 2025
Can I use the option --bowtie2out (for StrainPhlan!) along HUMANn? HUMAnN	3	56	May 29, 2025
Humann database errors (a short novel) HUMAnN	10	310	May 20, 2025
HUMAnN 3.9 fails when using '-t' flag with MetaPhlAn >4.0.6 HUMAnN	0	32	May 19, 2025
Error in merge_metaphlan_tables.py MetaPhlAn	1	30	May 19, 2025
HUMAnN 3.9: Low percentage in “Selected species explain X% of predicted community composition” HUMAnN	2	21	May 19, 2025
PhyloPhlAn in Galaxy: Requesting test database for phylophlan_assign_sgbs PhyloPhlAn	0	10	May 18, 2025
Large percentage of unmapped pathways, HUMAnN	4	51	May 16, 2025
Humann 4.0 alpha in workflow HUMAnN	5	199	May 16, 2025
Error Using --write-details in waafle_orgscorer (WAAFLE Tutorial Step 3) WAAFLE	0	6	May 8, 2025
MetaPhlAn did not detect any taxa in the tutorial sample MetaPhlAn	0	38	April 28, 2025
Phylophlan not considering all the MAGs for creation of .tre file PhyloPhlAn	0	11	April 25, 2025

Phylophlan questions

PhyloPhlAn

0

7

June 19, 2025

[e] gene_markers_identification crashed

PhyloPhlAn

0

3

June 18, 2025

MetaPhlAn 4.2.2 --profile_vsc

MetaPhlAn

2

28

June 18, 2025

Metaphlan no taxa

MetaPhlAn

2

38

June 16, 2025

Uniref90 Gene Families to Pathways

HUMAnN

3

1046

June 16, 2025

Combine metaphlan and humann

HUMAnN

2

46

June 15, 2025

Humans database

HUMAnN

15

434

June 13, 2025

Reaction to Pathways

HUMAnN

1

48

June 13, 2025

[e] No alignments found to concatenate

PhyloPhlAn

4

583

June 13, 2025

MetaPhlAn Databases

MetaPhlAn

1

31

June 13, 2025

HUMAnN 3.8 - How to get taxonomic results at the order level instead of genus?

HUMAnN

4

75

June 13, 2025

MetaPhlAn 4.2.2 release (initial long-read sequencing support and database update)

MetaPhlAn

Announcement We are pleased to share that MetaPhlAn 4.2.2 is now available, which incorporates taxonomic profiling of long-read metagenomes for the first time and includes a new version of the MetaPhlAn database (vJan25_…