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Dereplicating and normalizing reads for humann and metaphlan
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6
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79
|
January 30, 2026
|
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Failure Downloading HUMAnN UniRef90 DIAMOND Database via WSL
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0
|
10
|
January 28, 2026
|
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Discrepancy between estimated_number_of_reads_from_the_clade and the relative_abundance
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0
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24
|
January 20, 2026
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How long does it usually take to build a phylogenetic tree with PhyloPhlAn 3 using about 30 genomes?
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0
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9
|
January 17, 2026
|
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Glitch in humann4 genefamilies file creation
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0
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23
|
January 15, 2026
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Quality control of MetaPhlAn4 count table
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1
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24
|
January 15, 2026
|
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No SGBs in humann3.9 genefamily.tsv
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2
|
33
|
January 12, 2026
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Pathway abundance stratification
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0
|
29
|
January 9, 2026
|
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How to handle transferred and split EC numbers in humann outputs
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1
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16
|
January 9, 2026
|
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HUMAnN targeted functional analysis?
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2
|
81
|
January 9, 2026
|
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Humann (v3.9) returning 100% unaligned reads on demo data
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1
|
39
|
January 9, 2026
|
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HUMAnN4 Support for MetaPhlAn vJan25 Database
|
|
1
|
114
|
January 9, 2026
|
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VFDB marker details
|
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0
|
11
|
January 8, 2026
|
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SGB identifiers in different versions of Metaphlan database
|
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0
|
51
|
December 22, 2025
|
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Strainphlan sample2markers.py ERROR
|
|
5
|
99
|
December 18, 2025
|
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Question about ICTV taxonomy version and naming in BaqLaVa
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1
|
25
|
December 17, 2025
|
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SGB Newick file labels
|
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2
|
71
|
December 16, 2025
|
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Sgb_to_gtdb_profile.py keep read count estimation from -t rel_ab_w_read_stats
|
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9
|
521
|
December 12, 2025
|
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Feature request: Include taxonomy columns for baqlava_join_table utility script
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1
|
40
|
December 11, 2025
|
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Very-sensitive-local preset and unclassified reads in non-human gut samples
|
|
0
|
34
|
December 11, 2025
|
|
HUMAnN 4 database downloads inaccessible due to Globus (data.globus.org) domain blocking
|
|
2
|
57
|
December 9, 2025
|
|
Humann3 Database errors
|
|
7
|
162
|
December 8, 2025
|
|
HUMAnN (v3.6) a new db update issue - CHOCOPhlAnSGB_202103
|
|
6
|
165
|
December 7, 2025
|
|
How to silence database download message from Metaphlan 4.0.6 within Humann 3.8
|
|
4
|
158
|
December 7, 2025
|
|
HUMAnN 4 prescreen issue and input file format clarification
|
|
2
|
62
|
December 7, 2025
|
|
Combine Output from Separate Runs of Single Sample
|
|
3
|
67
|
December 5, 2025
|
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Trouble running HUMAnN with updated metaphlan database
|
|
3
|
245
|
December 5, 2025
|
|
Humann4 not recognizing relab column in metaphlan4 table
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1
|
61
|
December 5, 2025
|
|
Zero community-level pathways detected despite gene families present
|
|
1
|
51
|
December 5, 2025
|
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Absent tryptophan pathway in all metagenomic results
|
|
1
|
37
|
December 5, 2025
|