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Microbial community profiling


Topic Replies Views Activity
Humann_regroup_table for uniref90 KO
HUMAnN
3 28 September 10, 2021
MetaCyc vs. KEGG
HUMAnN
2 46 September 3, 2021
I only detected a few bacteria
HUMAnN
1 23 September 3, 2021
ChocoPhlAn/UniRef 201901b vs 201901
HUMAnN
3 56 September 3, 2021
Error: the version of diamond in humann3
HUMAnN
9 770 September 3, 2021
Release notes for HUMAnN 3.0.0 and ChocoPhlAn 201901b
HUMAnN

Hi All - HUMAnN 3.0.0 has been out in the wild for a little while now, but I was slow in getting these release notes together. Please reply with any questions. Thanks! -Eric Introduction HUMAnN 3.0.0 is a major upda…

1 41 September 1, 2021
Humann3 will not run demo due to database issue
HUMAnN
11 89 August 31, 2021
Confusing Instructions About Strain Analysis Using MetaPhlAn
MetaPhlAn
0 27 August 31, 2021
Length of concatenated alignment file
StrainPhlAn
12 83 August 31, 2021
Difference between metaphlan merged taxonomic abundance and humann3 joint taxonomic profile
HUMAnN
2 27 August 31, 2021
What is about the new pathcoverage
HUMAnN
1 21 August 30, 2021
Virulence Factor Identification
HUMAnN
3 59 August 30, 2021
PhyloPhlAn: Not enought markers
PhyloPhlAn
1 30 August 30, 2021
Metaphlan3, export2graphlan, graphlan compatibility issues
MetaPhlAn
2 53 August 30, 2021
Compression of Small Files
MetaPhlAn
0 23 August 28, 2021
Appended headers in panphlan annotation files
PanPhlAn
3 26 August 27, 2021
Average Read Coverage per Species Output
MetaPhlAn
0 25 August 27, 2021
Command '['bowtie2-build', '--usage']' returned non-zero exit status 250
MetaPhlAn
7 226 August 27, 2021
Merge_metaphlan_tables.py with absolute abundance
MetaPhlAn
2 191 August 24, 2021
Identifying Strain Names
StrainPhlAn
1 43 August 23, 2021
Cannot regroup into kegg pathway in Humann3
HUMAnN
10 142 August 20, 2021
Requirements for StrainPhlAn Missing in User Guide
MetaPhlAn
0 29 August 19, 2021
Humann_barplot sort
HUMAnN
5 45 August 17, 2021
Humann3 chocophlan duplicate IDs
HUMAnN
2 42 August 16, 2021
Running Metaphlan....Total species selected from prescreen: 0
HUMAnN
1 50 August 16, 2021
'update your version of MetaPhlAn2 to v3.0' error while running HUMAnN 3 in a HPC
HUMAnN
2 58 August 16, 2021
Phylophlan - creating database of markers
PhyloPhlAn
5 48 August 16, 2021
Downlodaing UniRef90 full database
HUMAnN
4 84 August 14, 2021
Error on iqtree step
PhyloPhlAn
6 43 August 13, 2021
MetaCyc hierarchy to invetigate/identify specific pathways
HUMAnN
8 250 August 12, 2021