|
Setting abundance percentage cutoff to 0. Confusing results
|
|
9
|
340
|
June 3, 2021
|
|
Metatranscriptomic data with MaAsLin2 & LEfSe
|
|
13
|
469
|
June 3, 2021
|
|
Calculate taxonomy table from 'genefamilies.tsv'
|
|
1
|
43
|
June 3, 2021
|
|
Pathway abundance and cross-samples comparison
|
|
1
|
47
|
June 3, 2021
|
|
Diamond version error
|
|
9
|
346
|
June 3, 2021
|
|
HUMAnN 3.0 optional and required reactions in pathway
|
|
1
|
26
|
June 3, 2021
|
|
Pathway coverage vs. pathway completeness
|
|
1
|
27
|
June 3, 2021
|
|
Kegg pathway for humann3 outputs
|
|
4
|
207
|
June 3, 2021
|
|
Custom Database Creation Consumes All Disk Space
|
|
1
|
33
|
June 3, 2021
|
|
Metaphlan step not working on cluster: CRITICAL ERROR
|
|
6
|
220
|
June 3, 2021
|
|
Virulence Factor Annotations
|
|
1
|
56
|
June 3, 2021
|
|
Creating toy custom database for DSL2 nextflow module development
|
|
4
|
41
|
June 3, 2021
|
|
Unable to create the tree of life: IsADirectoryError: [Errno 21] Is a directory: '/home/ubuntu/phylophlan/PhyloPhlAn.egg-info'
|
|
2
|
24
|
June 3, 2021
|
|
Missing Bacillus species in Metaphlan3
|
|
3
|
127
|
June 2, 2021
|
|
Problem with panphlan_map
|
|
3
|
31
|
June 2, 2021
|
|
Metagenomic - little confused
|
|
7
|
50
|
June 2, 2021
|
|
Utterly confused - PhloPhlAn 2 -> PhyloPhlAn 3 - how to characterise MAGs
|
|
2
|
166
|
June 2, 2021
|
|
Reordering Columns
|
|
1
|
29
|
June 1, 2021
|
|
Pseudomonas fluorescens group
|
|
3
|
32
|
June 1, 2021
|
|
Metaphlan & Strainphlan Output Expectation
|
|
2
|
38
|
May 29, 2021
|
|
Output differences in number of species
|
|
3
|
37
|
May 27, 2021
|
|
Most similar DADA2 taxonomic reference to ChocoPhlAn
|
|
2
|
38
|
May 27, 2021
|
|
MetaPhlAn Database Issue
|
|
16
|
275
|
May 20, 2021
|
|
Input Specification if Pre-Existing MetaPhlAn Files
|
|
4
|
36
|
May 20, 2021
|
|
Diamond version Error: HUMANn3
|
|
3
|
63
|
May 19, 2021
|
|
To get the absolute counts of each taxa
|
|
3
|
56
|
May 18, 2021
|
|
Minimum sample size for MelonnPan
|
|
2
|
22
|
May 18, 2021
|
|
Confusing Demo Instructions
|
|
0
|
31
|
May 18, 2021
|
|
Merge biom files in MetaPhlAn
|
|
2
|
31
|
May 18, 2021
|
|
How is UNKNOWN calculated?
|
|
7
|
382
|
May 17, 2021
|