Latest Microbial community profiling topics

Topic	Replies	Views	Activity
MetaPhlAn4 (mpa_vJun23_CHOCOPhlAnSGB_202307): unexpected behavior with fix_relab_mpa4.py MetaPhlAn	6	73	May 22, 2026
Beta diversity in metaphlan 4.2.4 doesn't work becuase of rbiom upgrade? MetaPhlAn	1	26	May 22, 2026
Correupt bowtie2 index file? metaphlan error MetaPhlAn	1	33	May 22, 2026
Humann4 conda install from release note HUMAnN	1	76	May 14, 2026
Nanopore long-reads analysis with Metaphlan4.2.2 MetaPhlAn	0	28	May 12, 2026
mpa_vJan25_CHOCOPhlAnSGB_202503.fna not downloaded in the .tar file MetaPhlAn	2	107	May 11, 2026
What’s is needed to build a custom HUMANN database? HUMAnN	7	1106	April 29, 2026
Unable to download Databases HUMAnN	10	91	April 23, 2026
Metaphlan 4 using with Humann3.9 HUMAnN	5	585	April 21, 2026
Can't download Uniref database HUMAnN	0	19	April 20, 2026
Humann_unpack_pathways command HUMAnN	5	256	April 15, 2026
Matching/linking profiled species using MetaPhlAn3 (v3.0.1) to MetaPhlAn (4.2.4),database: mpa_vJan25_CHOCOPhlAnSGB_202503 MetaPhlAn	0	32	April 9, 2026
Matching tools and database versions HUMAnN	8	182	April 9, 2026
Tutorial not up to date and unable to run successfully HUMAnN	0	51	April 5, 2026
Metaphlan 3.0.7 related problem with deep sequenced wgs file MetaPhlAn	0	19	April 3, 2026
Customize/update the Metacyc pathways database in PICRUSt2 for fungi PICRUSt	0	12	April 3, 2026
Inquiry regarding qPCR primer design for uncharacterized SGBs using the CHOCOPhlAn marker database MetaPhlAn	0	17	April 1, 2026
HUMANN3.9 cannot recognize MetaPhlAn 4.2.2 output file MetaPhlAn	11	586	April 1, 2026
StrainPhlAn for detection of known strains in mixed-strain samples StrainPhlAn	0	25	March 31, 2026
No full uniref90 db in humann4 HUMAnN	2	159	March 30, 2026
ShortBRED Identify and CARD 2023 ShortBRED	2	369	March 29, 2026
MetaPhlAn 4 + HUMAnN 4 compatibility HUMAnN HUMAnN users - I’m making a quick pinned post about MetaPhlAn 4 + HUMAnN 4 compatibility since we’re seeing a lot of posts raising similar issues. We will follow up with more detailed information in the short term, and l…	22	2178	March 27, 2026
Inquiry regarding the compatible ChocoPhlAn database version for MetaPhlAn 4.2.4 and StrainPhlAn 4.1 StrainPhlAn	0	17	March 27, 2026
Metaphlan genus level relative abundance not summing up to 100% and possible database problem MetaPhlAn	10	949	March 23, 2026
Help with fugossem FUGAsseM	3	23	March 18, 2026
calculate_diversity.R script is not working properly MetaPhlAn	1	72	March 15, 2026
MetaPhlAn removes the database then complains there is no database MetaPhlAn	0	84	March 12, 2026
Humann 3.9 conda install will not work. Please update your version of MetaPhlAn? HUMAnN	6	554	March 9, 2026
Humann3 hanging during run, no error messages but no changes to output, log or temp files HUMAnN	21	1095	March 9, 2026
Very low mapping rate of Hummann v4alpha HUMAnN	3	151	March 6, 2026

MetaPhlAn4 (mpa_vJun23_CHOCOPhlAnSGB_202307): unexpected behavior with fix_relab_mpa4.py

MetaPhlAn

6

73

May 22, 2026

Beta diversity in metaphlan 4.2.4 doesn't work becuase of rbiom upgrade?

MetaPhlAn

1

26

May 22, 2026

Correupt bowtie2 index file? metaphlan error

MetaPhlAn

1

33

May 22, 2026

Humann4 conda install from release note

HUMAnN

1

76

May 14, 2026

Nanopore long-reads analysis with Metaphlan4.2.2

MetaPhlAn

0

28

May 12, 2026

mpa_vJan25_CHOCOPhlAnSGB_202503.fna not downloaded in the .tar file

MetaPhlAn

2

107

May 11, 2026

What’s is needed to build a custom HUMANN database?

HUMAnN

7

1106

April 29, 2026

Unable to download Databases

HUMAnN

10

91

April 23, 2026

Metaphlan 4 using with Humann3.9

HUMAnN

5

585

April 21, 2026

Can't download Uniref database

HUMAnN

0

19

April 20, 2026

Humann_unpack_pathways command

HUMAnN

5

256

April 15, 2026

Matching/linking profiled species using MetaPhlAn3 (v3.0.1) to MetaPhlAn (4.2.4),database: mpa_vJan25_CHOCOPhlAnSGB_202503

MetaPhlAn

0

32

April 9, 2026

Matching tools and database versions

HUMAnN

8

182

April 9, 2026

Tutorial not up to date and unable to run successfully

HUMAnN

0

51

April 5, 2026

Metaphlan 3.0.7 related problem with deep sequenced wgs file

MetaPhlAn

0

19

April 3, 2026

Customize/update the Metacyc pathways database in PICRUSt2 for fungi

PICRUSt

0

12

April 3, 2026

Inquiry regarding qPCR primer design for uncharacterized SGBs using the CHOCOPhlAn marker database

MetaPhlAn

0

17

April 1, 2026

HUMANN3.9 cannot recognize MetaPhlAn 4.2.2 output file

MetaPhlAn

11

586

April 1, 2026

StrainPhlAn for detection of known strains in mixed-strain samples

StrainPhlAn

0

25

March 31, 2026

No full uniref90 db in humann4

HUMAnN

2

159

March 30, 2026

ShortBRED Identify and CARD 2023

ShortBRED

2

369

March 29, 2026

MetaPhlAn 4 + HUMAnN 4 compatibility

HUMAnN

HUMAnN users - I’m making a quick pinned post about MetaPhlAn 4 + HUMAnN 4 compatibility since we’re seeing a lot of posts raising similar issues. We will follow up with more detailed information in the short term, and l…