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Building a MetaPhlAn database from fasta sequences
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1
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659
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March 13, 2023
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Phylophlan arcahea clustering within bacteria
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4
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134
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April 10, 2024
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Ancient DNA microorganisms
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0
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30
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April 9, 2024
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Humann databases need to be updated
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0
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53
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April 8, 2024
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StrainPhlan 4 tutorial issues
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3
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457
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March 22, 2024
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Cannot reproduce results of MetaPhlAn 4.0 tutorial
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4
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465
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September 1, 2023
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Retrieve FASTA files for SGB genomes
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0
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43
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April 1, 2024
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Sample2markers don't generate any pkl files, but instead generate json.bz2 files
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1
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43
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April 1, 2024
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HUMAnN database download
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6
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324
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April 1, 2024
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Merge_metaphlan_tables.py doesn't work after converting to GTDB taxonomy
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11
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807
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March 30, 2024
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[e] both db_dna and db_aa are None!
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0
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46
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March 27, 2024
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Unable to merge virus profile.txt files into table
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1
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87
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March 26, 2024
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Lateral gene transfer events
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2
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114
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March 26, 2024
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Metaphlan with -t marker counts, not producing counts
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2
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69
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March 26, 2024
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Unable to use MetaPhlAn-4 database
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5
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1220
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March 25, 2024
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Error occuring at Phylophlan execution while running Strainphlan 4
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2
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222
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March 22, 2024
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Error while trying to use melonnpan for predicting metabolites from metatranscriptome data
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1
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50
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March 21, 2024
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Problem with metaphlan2krona.py
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7
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651
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March 20, 2024
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CRITICAL ERROR: The directory provided for ChocoPhlAn contains files that are not of the expected version
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5
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898
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August 18, 2023
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Merge_metaphlan_tables.py error after fix_relab_mpa4.py
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0
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53
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March 19, 2024
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Merged abundance table to biom format
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11
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3385
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March 18, 2024
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Metaphlan 4 parameters for Mouse Gut
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2
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192
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March 18, 2024
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Request to determine the threshold for strain transfer
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1
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91
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March 18, 2024
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StrainPhlAn Usage for Bacterial SNP Annotation
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1
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98
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March 18, 2024
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Samfile error when applying strainphlan to output .bz2 files of metaphlan
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1
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105
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March 18, 2024
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Phylophlan mafft problem (implemented in strainphlan)
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5
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1480
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March 18, 2024
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Strainphlan: [e] Parallel execution fails: Ran out of input
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1
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71
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March 14, 2024
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Inconsistent pathway stratification
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4
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177
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March 11, 2024
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Differentiating between "kSGBs" and "uSGBs" in MetaPhlAn 4
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1
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92
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March 11, 2024
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List of Taxonomy IDs in Metaphlan database
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1
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78
|
March 11, 2024
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