Latest Microbial community profiling topics

Topic	Replies	Views	Activity
Trying to run Humann3 on a set of MAGs HUMAnN	1	12	August 2, 2024
No species identified and empty pathway files created HUMAnN	7	585	August 2, 2024
Announcing MetaPhlAn 4.1.1 release MetaPhlAn Announcement: We are pleased to share that MetaPhlAn 4.1.1 is now available, which provides fixed and consistent taxonomic identification at high taxonomic ranks, allowing accurate relative abundance estimation also at h…	3	456	August 1, 2024
Announcing MetaPhlAn 4.1 release (new virome database and SGB database update) MetaPhlAn	10	1732	May 27, 2024
Percentage of classification MetaPhlAn	0	14	July 31, 2024
Identical values of different RXN number (with the same gene family) HUMAnN	7	242	July 24, 2024
Model Transferrability to Different Human Anatomic Site MelonnPan	0	8	July 23, 2024
Discrepancy in taxonomy between metaphlan and chocophlan HUMAnN	3	43	July 19, 2024
HuManN v4 output are different HUMAnN	5	106	July 18, 2024
Almost all microbes unmapped or unintegrated - Rat Stool Samples HUMAnN	2	28	July 17, 2024
Auto-updating database seems to break MetaPhlAn4 MetaPhlAn	4	197	July 17, 2024
HUMAnN and Megan comparison HUMAnN	1	63	July 16, 2024
Question about calculate_diversity.R MetaPhlAn	5	650	July 16, 2024
StrainPhLan4 and GTDB StrainPhlAn	0	19	July 15, 2024
Metaphlan4_database problem MetaPhlAn	0	41	July 15, 2024
HUMann2 and MetaPhlAn2 MetaPhlAn	0	14	July 13, 2024
Failing with error about MSPminer MetaWIBELE	3	20	July 12, 2024
(ERR): bowtie2-align died with signal 7 (BUS) (core dumped)[Errno 32] Broken pipe MetaPhlAn	0	9	July 12, 2024
Metaphlan 3.0 manual db download problem MetaPhlAn	0	13	July 12, 2024
Inquiry regarding change of default parameters in StrainPhlAn StrainPhlAn	0	16	July 12, 2024
StrainPhlan sample2markers.py loading database StrainPhlAn	0	12	July 12, 2024
Phylogenetic tree for 2000 genomes PhyloPhlAn	2	49	July 11, 2024
No metabat_bin is assigned by PhyloPhlan --- metabat_bin.# is close to an SGB not present in the SGB.Jun23 database PhyloPhlAn	1	46	July 11, 2024
Questions about the command in Step1 of Example 02 PhyloPhlAn	1	21	July 11, 2024
How to use GTDB database using phylophlan PhyloPhlAn	3	256	July 11, 2024
Error when running Metaphlan Microbial community profiling	3	28	July 11, 2024
Producing figures and quantifying HGT WAAFLE	0	33	July 5, 2024
Type Error: unsupported operand type(s) for +: 'int' and 'str' MetaPhlAn	0	18	July 4, 2024
Inquiry regarding MetaPhlAn SGBs phylogenetic tree MetaPhlAn	18	1321	July 4, 2024
UnboundLocalError: local variable 'go_mf' referenced before assignment MetaWIBELE	1	20	July 3, 2024

Trying to run Humann3 on a set of MAGs

HUMAnN

1

12

August 2, 2024

No species identified and empty pathway files created

HUMAnN

7

585

August 2, 2024

Announcing MetaPhlAn 4.1.1 release

MetaPhlAn

Announcement: We are pleased to share that MetaPhlAn 4.1.1 is now available, which provides fixed and consistent taxonomic identification at high taxonomic ranks, allowing accurate relative abundance estimation also at h…