Latest Microbial community profiling topics

Topic	Replies	Views	Activity
Unable to run PhyloPhlan without trimming the msa PhyloPhlAn	0	32	May 15, 2023
Metaphaln: trimmed or non trimmed fastq MetaPhlAn	1	44	May 13, 2023
MetaPhlAn 4 appropriate for shallow shotgun sequenced data? MetaPhlAn	1	60	May 12, 2023
Dropbox Error with Metaphlan while running tutorial for Humann HUMAnN	1	44	May 12, 2023
PhyloPhlAn3: muscle returned non-zero exit status 1 PhyloPhlAn	0	21	May 12, 2023
Unable to download proteins PhyloPhlAn	6	274	May 12, 2023
Upgrading to more recent Uniref databases for Humann3 HUMAnN	7	331	May 11, 2023
About duplicate reads MetaPhlAn	0	44	May 10, 2023
How to do CAZy gene profiling? HUMAnN	8	596	May 9, 2023
MAG sequences used in MetaPhlAn 4 data base MetaPhlAn	3	157	May 9, 2023
Metaphlan4 and graphlan compatability StrainPhlAn	1	36	May 9, 2023
Problem extracting the species marker genes from metaphlan4 database StrainPhlAn	1	36	May 9, 2023
A Error occurred by running StrainPhlAn(4.0.6), this error is [Error] Phylogeny can not be inferred. Too many samples were discarded StrainPhlAn	5	120	May 9, 2023
Strainphlan Version 4.0.6 Error AttributeError: 'Seq' object has no attribute 'replace' StrainPhlAn	2	86	May 8, 2023
Humann3 only generated temp folder and no 3 main output files HUMAnN	2	60	May 7, 2023
Metaphlan 3.1 phylogenetic tree MetaPhlAn	13	304	May 5, 2023
Announcing the MetaPhlAn 3.1 phylogenetic tree MetaPhlAn	1	114	May 5, 2023
No species identified and empty pathway files created HUMAnN	4	109	May 4, 2023
MetaPhlan Database HUMAnN	6	114	May 4, 2023
Announcing HUMAnN 3.7 HUMAnN Summary: HUMAnN 3.7 enables tiered search using MetaPhlAn 4’s recently updated marker database (October 2022 version) and the bioBakery 3.1 pangenome catalog. What has changed in HUMAnN 3.7: HUMAnN 3.7 maps MetaPhl…	3	279	May 4, 2023
Humann3 => only unclassified results \| but not with humann2 HUMAnN	3	93	May 4, 2023
Humann3 empty output HUMAnN	1	53	May 4, 2023
Humann biocontainer: Unable to write to the HUMAnN config file HUMAnN	2	127	May 4, 2023
CRITICAL ERROR: The directory provided for ChocoPhlAn does not contain files of the expected format (ie '^[g__][s__]') HUMAnN	3	2055	May 4, 2023
Humann3: tax profile parsing error is a bit misleading HUMAnN	2	38	May 1, 2023
CRITICAL ERROR: Error executing: blastx diamond HUMAnN	1	71	April 28, 2023
UnicodeDecodeError when run PhyloPhlan3 PhyloPhlAn	0	75	April 28, 2023
Relative counts in MetaPhlan-generated Biom file sum to greater than 100% MetaPhlAn	0	65	April 27, 2023
Issues with Unifrac calculations MetaPhlAn	3	84	April 27, 2023
Metaphlan4_Broken pipe error MetaPhlAn	3	104	April 26, 2023

Unable to run PhyloPhlan without trimming the msa

PhyloPhlAn

0

32

May 15, 2023

Metaphaln: trimmed or non trimmed fastq

MetaPhlAn

1

44

May 13, 2023

MetaPhlAn 4 appropriate for shallow shotgun sequenced data?

MetaPhlAn

1

60

May 12, 2023

Dropbox Error with Metaphlan while running tutorial for Humann

HUMAnN

1

44

May 12, 2023

PhyloPhlAn3: muscle returned non-zero exit status 1

PhyloPhlAn

0

21

May 12, 2023

Unable to download proteins

PhyloPhlAn

6

274

May 12, 2023

Upgrading to more recent Uniref databases for Humann3

HUMAnN

7

331

May 11, 2023

About duplicate reads

MetaPhlAn

0

44

May 10, 2023

How to do CAZy gene profiling?

HUMAnN

8

596

May 9, 2023

MAG sequences used in MetaPhlAn 4 data base

MetaPhlAn

3

157

May 9, 2023

Metaphlan4 and graphlan compatability

StrainPhlAn

1

36

May 9, 2023

Problem extracting the species marker genes from metaphlan4 database

StrainPhlAn

1

36

May 9, 2023

A Error occurred by running StrainPhlAn(4.0.6), this error is [Error] Phylogeny can not be inferred. Too many samples were discarded

StrainPhlAn

5

120

May 9, 2023

Strainphlan Version 4.0.6 Error AttributeError: 'Seq' object has no attribute 'replace'

StrainPhlAn

2

86

May 8, 2023

Humann3 only generated temp folder and no 3 main output files

HUMAnN

2

60

May 7, 2023

Metaphlan 3.1 phylogenetic tree

MetaPhlAn

13

304

May 5, 2023

Announcing the MetaPhlAn 3.1 phylogenetic tree

MetaPhlAn

1

114

May 5, 2023

No species identified and empty pathway files created

HUMAnN

4

109

May 4, 2023

MetaPhlan Database

HUMAnN

6

114

May 4, 2023

Announcing HUMAnN 3.7

HUMAnN

Summary: HUMAnN 3.7 enables tiered search using MetaPhlAn 4’s recently updated marker database (October 2022 version) and the bioBakery 3.1 pangenome catalog. What has changed in HUMAnN 3.7: HUMAnN 3.7 maps MetaPhl…