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About the PhyloPhlAn category
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0
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1180
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October 31, 2019
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Error when running PhyloPhlAn [e] No alignments found to concatenate
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0
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5
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August 28, 2024
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Error phylophlan_assign_sgbs.py
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3
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28
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August 7, 2024
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Phylophlan: error: unrecognized arguments: --strainphlan
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5
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303
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August 7, 2024
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PhyloPhlAn 3: Example 05: Proteobacteria ANI figure
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1
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6
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August 7, 2024
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Phylogenetic tree for 2000 genomes
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2
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54
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July 11, 2024
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No metabat_bin is assigned by PhyloPhlan --- metabat_bin.# is close to an SGB not present in the SGB.Jun23 database
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1
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47
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July 11, 2024
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Questions about the command in Step1 of Example 02
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1
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21
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July 11, 2024
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How to use GTDB database using phylophlan
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3
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258
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July 11, 2024
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Phylophlan-3.1.1 :: setup.py miss requests in requirements
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0
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67
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April 22, 2024
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Unable to run example 1
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6
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733
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April 22, 2024
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Phylophlan arcahea clustering within bacteria
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4
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204
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April 10, 2024
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[e] both db_dna and db_aa are None!
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0
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122
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March 27, 2024
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PhyloPhlAn: using a manually downloaded database
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18
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2222
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February 10, 2024
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Error when tried MSA with MUSCLE
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1
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260
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February 10, 2024
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How to interpret phylophlan_strain_finder result
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1
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220
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February 10, 2024
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Phylophlan Tree of life
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1
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195
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February 10, 2024
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All bins identified as the same
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0
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223
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September 27, 2023
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Phylophlan Nucleotide Database for marker genes
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0
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161
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September 18, 2023
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Issues with Muscle 5 compatibility
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0
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189
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September 8, 2023
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Unrooted Tree Splitting Species
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0
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136
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September 6, 2023
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PhyloPhlAn3: muscle returned non-zero exit status 1
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1
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325
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August 28, 2023
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Optimize run time in Phylophlan3
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2
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653
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August 28, 2023
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Can I specify which reference genomes to download in PhyloPhlAn?
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1
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307
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August 28, 2023
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Wrong assignment of Phylogeny
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4
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318
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May 18, 2023
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Error running raxml on S.Aureus tutorial data
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1
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587
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May 18, 2023
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Speeding up PhyloPhlAn (RAxML-HPC step)
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3
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930
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May 18, 2023
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Unable to run PhyloPhlan without trimming the msa
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0
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249
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May 15, 2023
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Unable to download proteins
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6
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810
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May 12, 2023
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UnicodeDecodeError when run PhyloPhlan3
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0
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422
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April 28, 2023
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