About the PhyloPhlAn category
|
|
0
|
1200
|
October 31, 2019
|
PhyloPhlAn in Galaxy: Requesting test database for phylophlan_assign_sgbs
|
|
0
|
1
|
May 18, 2025
|
Phylophlan not considering all the MAGs for creation of .tre file
|
|
0
|
7
|
April 25, 2025
|
Ethiopian tutorial error
|
|
0
|
29
|
March 14, 2025
|
Trouble with Arguments and Time it Takes to Make Tree
|
|
0
|
17
|
February 24, 2025
|
Explanation of the output of phylophlan_metagenomic
|
|
3
|
942
|
February 10, 2025
|
Result of phylophlan_assign_sgbs resulting in error in phylophlan_draw_metagenomic?
|
|
0
|
17
|
January 28, 2025
|
Phylophlan: problem with bootstrap instructions in the config file
|
|
0
|
26
|
December 22, 2024
|
No metabat_bin is assigned by PhyloPhlan --- metabat_bin.# is close to an SGB not present in the SGB.Jun23 database
|
|
3
|
76
|
October 22, 2024
|
[e] gene_markers_selection crashed (SOLUTION)
|
|
0
|
22
|
October 7, 2024
|
Error when running PhyloPhlAn [e] No alignments found to concatenate
|
|
0
|
14
|
August 28, 2024
|
Error phylophlan_assign_sgbs.py
|
|
3
|
42
|
August 7, 2024
|
Phylophlan: error: unrecognized arguments: --strainphlan
|
|
5
|
320
|
August 7, 2024
|
PhyloPhlAn 3: Example 05: Proteobacteria ANI figure
|
|
1
|
9
|
August 7, 2024
|
Phylogenetic tree for 2000 genomes
|
|
2
|
73
|
July 11, 2024
|
Questions about the command in Step1 of Example 02
|
|
1
|
28
|
July 11, 2024
|
How to use GTDB database using phylophlan
|
|
3
|
274
|
July 11, 2024
|
Phylophlan-3.1.1 :: setup.py miss requests in requirements
|
|
0
|
70
|
April 22, 2024
|
Unable to run example 1
|
|
6
|
754
|
April 22, 2024
|
Phylophlan arcahea clustering within bacteria
|
|
4
|
210
|
April 10, 2024
|
[e] both db_dna and db_aa are None!
|
|
0
|
145
|
March 27, 2024
|
PhyloPhlAn: using a manually downloaded database
|
|
18
|
2282
|
February 10, 2024
|
Error when tried MSA with MUSCLE
|
|
1
|
267
|
February 10, 2024
|
How to interpret phylophlan_strain_finder result
|
|
1
|
222
|
February 10, 2024
|
Phylophlan Tree of life
|
|
1
|
210
|
February 10, 2024
|
All bins identified as the same
|
|
0
|
227
|
September 27, 2023
|
Phylophlan Nucleotide Database for marker genes
|
|
0
|
167
|
September 18, 2023
|
Issues with Muscle 5 compatibility
|
|
0
|
194
|
September 8, 2023
|
Unrooted Tree Splitting Species
|
|
0
|
139
|
September 6, 2023
|
PhyloPhlAn3: muscle returned non-zero exit status 1
|
|
1
|
346
|
August 28, 2023
|