|
About the PhyloPhlAn category
|
|
0
|
591
|
October 31, 2019
|
|
Phylophlan3 database in phylophlan command
|
|
1
|
7
|
September 24, 2021
|
|
Just installed PhyloPhlAn 3.0.06, missing the tutorial folder
|
|
0
|
11
|
September 22, 2021
|
|
PhyloPhlAn: Not enought markers
|
|
1
|
30
|
August 30, 2021
|
|
Phylophlan - creating database of markers
|
|
5
|
48
|
August 16, 2021
|
|
Error on iqtree step
|
|
6
|
43
|
August 13, 2021
|
|
Prokaryotic tree reconstruction pipeline issue
|
|
5
|
31
|
August 9, 2021
|
|
Error while executing raxmlHPC-PTHREADS-SSE3
|
|
4
|
48
|
July 22, 2021
|
|
Phylophan and Binned fasta
|
|
9
|
79
|
July 7, 2021
|
|
Using multiple cores with Mac
|
|
1
|
43
|
June 23, 2021
|
|
Phylophlan_metagenomic: unable to download databases
|
|
1
|
67
|
June 15, 2021
|
|
Unable to create the tree of life: IsADirectoryError: [Errno 21] Is a directory: '/home/ubuntu/phylophlan/PhyloPhlAn.egg-info'
|
|
2
|
88
|
June 3, 2021
|
|
Metagenomic - little confused
|
|
7
|
100
|
June 2, 2021
|
|
Utterly confused - PhloPhlAn 2 -> PhyloPhlAn 3 - how to characterise MAGs
|
|
2
|
252
|
June 2, 2021
|
|
Phylophlan_metagenomic crashed
|
|
3
|
184
|
May 10, 2021
|
|
PhyloPhlAn: using a manually downloaded database
|
|
16
|
258
|
April 30, 2021
|
|
PhyloPhlAn 3 - E coli input produces "[e] No alignments found to concatenate"
|
|
2
|
208
|
April 20, 2021
|
|
Is there some database update than "taxa2core_cpa201901_up201901.txt.bz2"?
|
|
1
|
68
|
April 12, 2021
|
|
Speeding up PhyloPhlAn (RAxML-HPC step)
|
|
1
|
146
|
April 2, 2021
|
|
raxmlHPC failed: [e] refine_gene_tree crashed
|
|
10
|
151
|
January 26, 2021
|
|
Is there a way to use phylophlan_metagenomic with the phylophlan database?
|
|
1
|
126
|
January 26, 2021
|
|
Explanation of the output of phylophlan_metagenomic
|
|
2
|
121
|
January 21, 2021
|
|
Pre-downloading PhyloPhlAn databases?
|
|
1
|
201
|
January 21, 2021
|
|
Error running FastTreeMP step
|
|
5
|
238
|
January 21, 2021
|
|
PhyloPhlAn Crash-------
|
|
2
|
406
|
January 20, 2021
|
|
Quantifying uncertainty the level of uncertainty in phylophlan_metagenomic
|
|
2
|
126
|
January 14, 2021
|
|
Supermatrix alignment has varying length -> error in tree build
|
|
2
|
128
|
January 8, 2021
|
|
Isolates_config.cfg from S aureus example in tutorial
|
|
2
|
112
|
December 9, 2020
|
|
UnboundLocalError: local variable 'input_faa_clean' referenced before assignment
|
|
2
|
755
|
December 8, 2020
|
|
How many markers included in Phylophlan concatenated alignment?
|
|
1
|
212
|
October 2, 2020
|