|
About the PhyloPhlAn category
|
|
0
|
1229
|
October 31, 2019
|
|
Missing dependency pyrodigal in bioconda recipe/biocontainers
|
|
1
|
15
|
June 10, 2026
|
|
How long does it usually take to build a phylogenetic tree with PhyloPhlAn 3 using about 30 genomes?
|
|
0
|
16
|
January 17, 2026
|
|
FastTreeMP execution error
|
|
0
|
24
|
August 4, 2025
|
|
Ethiopian tutorial error
|
|
1
|
70
|
July 2, 2025
|
|
Can't download the Ethiopian genome bins（Ethiopian MAGs））
|
|
0
|
27
|
June 30, 2025
|
|
How to skip alignment step and use pre-aligned core genes for phylogeny?
|
|
0
|
23
|
June 30, 2025
|
|
Unable to run example 1
|
|
7
|
846
|
June 23, 2025
|
|
Phylophlan questions
|
|
0
|
34
|
June 19, 2025
|
|
[e] gene_markers_identification crashed
|
|
0
|
21
|
June 18, 2025
|
|
[e] No alignments found to concatenate
|
|
4
|
617
|
June 13, 2025
|
|
PhyloPhlAn in Galaxy: Requesting test database for phylophlan_assign_sgbs
|
|
0
|
45
|
May 18, 2025
|
|
Phylophlan not considering all the MAGs for creation of .tre file
|
|
0
|
29
|
April 25, 2025
|
|
Trouble with Arguments and Time it Takes to Make Tree
|
|
0
|
47
|
February 24, 2025
|
|
Explanation of the output of phylophlan_metagenomic
|
|
3
|
987
|
February 10, 2025
|
|
Result of phylophlan_assign_sgbs resulting in error in phylophlan_draw_metagenomic?
|
|
0
|
48
|
January 28, 2025
|
|
Phylophlan: problem with bootstrap instructions in the config file
|
|
0
|
44
|
December 22, 2024
|
|
No metabat_bin is assigned by PhyloPhlan --- metabat_bin.# is close to an SGB not present in the SGB.Jun23 database
|
|
3
|
120
|
October 22, 2024
|
|
[e] gene_markers_selection crashed (SOLUTION)
|
|
0
|
45
|
October 7, 2024
|
|
Error when running PhyloPhlAn [e] No alignments found to concatenate
|
|
0
|
26
|
August 28, 2024
|
|
Error phylophlan_assign_sgbs.py
|
|
3
|
77
|
August 7, 2024
|
|
Phylophlan: error: unrecognized arguments: --strainphlan
|
|
5
|
358
|
August 7, 2024
|
|
PhyloPhlAn 3: Example 05: Proteobacteria ANI figure
|
|
1
|
24
|
August 7, 2024
|
|
Phylogenetic tree for 2000 genomes
|
|
2
|
180
|
July 11, 2024
|
|
Questions about the command in Step1 of Example 02
|
|
1
|
46
|
July 11, 2024
|
|
How to use GTDB database using phylophlan
|
|
3
|
304
|
July 11, 2024
|
|
Phylophlan-3.1.1 :: setup.py miss requests in requirements
|
|
0
|
83
|
April 22, 2024
|
|
Phylophlan arcahea clustering within bacteria
|
|
4
|
244
|
April 10, 2024
|
|
[e] both db_dna and db_aa are None!
|
|
0
|
173
|
March 27, 2024
|
|
PhyloPhlAn: using a manually downloaded database
|
|
18
|
2471
|
February 10, 2024
|