How to use GTDB database using phylophlan

Microbial community profiling PhyloPhlAn
1

I want to use GTDB database (manually downloaded) with phylophlan. Kindly guide me through the steps.

2

Hi there, have you checked out the Database setup section of the wiki? You should be able to find all the info you need there.

Please, let me know if something is not clear.

Thanks,
Francesco

3

Hi! I also come across the same problem, I wonder how did you solve this problem?

Thanks,
Sushi

4

Hi Sushi, what’s your goal, and what is the problem with using PhyloPhlAn?
I can try to help you if you can be more specific and provide me with some more info.

Thanks,
Francesco