Hello
fresh install of phylophlan-3.1.1 from tagged version https://github.com/biobakery/phylophlan/archive/refs/tags/3.1.1.tar.gz in a virtual env with python/3.8.1
phylophlan_setip_database --help exit with the following error.
build [rpm]:phylophlan/phylophlan-3.1.1 > phylophlan_setup_database --help
Traceback (most recent call last):
File "/opt/gensoft/exe/phylophlan/3.1.1/bin/phylophlan_setup_database", line 33, in <module>
sys.exit(load_entry_point('PhyloPhlAn==3.1.1', 'console_scripts', 'phylophlan_setup_database')())
File "/opt/gensoft/exe/phylophlan/3.1.1/bin/phylophlan_setup_database", line 25, in importlib_load_entry_point
return next(matches).load()
File "/opt/gensoft/adm/Python/3.8/lib/python3.8/importlib/metadata.py", line 76, in load
module = import_module(match.group('module'))
File "/opt/gensoft/adm/Python/3.8/lib/python3.8/importlib/__init__.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "<frozen importlib._bootstrap>", line 1014, in _gcd_import
File "<frozen importlib._bootstrap>", line 991, in _find_and_load
File "<frozen importlib._bootstrap>", line 975, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 671, in _load_unlocked
File "<frozen importlib._bootstrap_external>", line 783, in exec_module
File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed
File "/opt/gensoft/exe/phylophlan/3.1.1/venv/lib/python3.8/site-packages/PhyloPhlAn-3.1.1-py3.8.egg/phylophlan/phylophlan_setup_database.py", line 30, in <module>
import requests
ModuleNotFoundError: No module named 'requests'
fix is pretty obvious.
regards
Eric