|
About the bioBakery workflows category
|
|
0
|
339
|
October 29, 2019
|
|
Biobakery workflows with metaphlan4 and humann3
|
|
0
|
26
|
January 23, 2023
|
|
groups: invalid choice: 'uniref90_level4ec' (choose from 'uniref90_rxn', 'uniref50_rxn')\n"`
|
|
2
|
331
|
January 21, 2023
|
|
Update to the latest version of biobakery_workflows
|
|
0
|
27
|
January 18, 2023
|
|
Err: ERROR: Unable to find trf. Please provide the full path to trf with --trf
|
|
0
|
30
|
January 5, 2023
|
|
HUMAnN conda installation dependency issues
|
|
1
|
74
|
December 22, 2022
|
|
Biobakery_workflows wmgx_vis error
|
|
0
|
185
|
May 15, 2022
|
|
Error for humann
|
|
0
|
56
|
May 19, 2022
|
|
Wmgx_wmtx visualization rna_dna_norm.py failure
|
|
0
|
74
|
July 15, 2022
|
|
For developer:it hard to download database when install biobakery_workflows
|
|
0
|
46
|
December 2, 2022
|
|
Visualisation workflow will fail if path contains dash (-) character
|
|
0
|
49
|
November 9, 2022
|
|
Cannot get biobakery_workflows vis to run
|
|
12
|
273
|
November 9, 2022
|
|
Biobakery Workflows: Errors with downloading database, "unpicking error", “topological_sort()" error, and "Unable to find Trimmomatic" error
|
|
7
|
1690
|
November 7, 2022
|
|
ValueError: Unable to find binary or script `metaphlan’
|
|
0
|
33
|
November 2, 2022
|
|
Error wmgx: TypeError: 'zip' object is not subscriptable
|
|
0
|
36
|
October 27, 2022
|
|
Strainohlan problem inside biobakery workflows
|
|
1
|
54
|
October 18, 2022
|
|
Cannot find the bioBakery AMI in Amazon EC2
|
|
0
|
90
|
September 22, 2022
|
|
Could not find "makeblastdb" executable in your PATH environment
|
|
5
|
668
|
September 12, 2022
|
|
UnboundLocalError: local variable 'qmax' referenced before assignment
|
|
2
|
657
|
September 6, 2022
|
|
Any plans to update biobakery/workflows docker image with Metaphlan 4?
|
|
0
|
135
|
August 31, 2022
|
|
Graphics card processor
|
|
0
|
59
|
August 23, 2022
|
|
Error installing wmgx: biobakery_workflows_databases --install wmgx
|
|
8
|
1248
|
August 22, 2022
|
|
Internal Bowtie 2 exception (#1) Error Downloading Biobakery_workflows reference databases
|
|
4
|
370
|
August 16, 2022
|
|
All task fails - Biobakery workflows wmgx
|
|
1
|
121
|
August 9, 2022
|
|
Error in rna_dna_norm.py code when mapping samples during wmgx_wmtx worfklow
|
|
0
|
60
|
July 19, 2022
|
|
Could not find "mafft" ("False")
|
|
0
|
102
|
July 15, 2022
|
|
Biobakery_Workflows wmgx: TypeError
|
|
6
|
1058
|
July 5, 2022
|
|
Biobakery conda install: can't run example data
|
|
0
|
163
|
June 30, 2022
|
|
Problems with Conda environment and biobakery_workflows in cluster
|
|
3
|
249
|
June 22, 2022
|
|
Run biobakery_workflows wmgx example failed, maybe some problems in shotgun.py
|
|
0
|
139
|
May 31, 2022
|