|
About the Infrastructure/Utilities category
|
|
2
|
681
|
May 15, 2020
|
|
KneadData — Need clarification on the exact input file names used at each internal step
|
|
1
|
22
|
November 7, 2025
|
|
Biobakery workflows MetaPhlAn4 stucked
|
|
0
|
14
|
October 27, 2025
|
|
Can't install MelonnPan -- AssocTests no longer available
|
|
5
|
63
|
October 15, 2025
|
|
Access to Biobakery Galaxy unavailable
|
|
0
|
5
|
October 7, 2025
|
|
Grid Jobs Benchmarking
|
|
0
|
9
|
October 3, 2025
|
|
Custom Adapter Sequence in Kneaddata
|
|
2
|
38
|
September 30, 2025
|
|
Kneaddata output as input for metaphlan
|
|
1
|
14
|
September 30, 2025
|
|
Bowtie-2-build indexing fails
|
|
0
|
14
|
September 1, 2025
|
|
Is there an environment .yaml file for biobakery workflow?
|
|
1
|
14
|
August 8, 2025
|
|
Trouble installing MelonnPan
|
|
1
|
11
|
July 18, 2025
|
|
Kneaddata tar of human_genome uncompresses in subdirectory
|
|
2
|
45
|
June 25, 2025
|
|
Kneaddata Outputting Disordered Paired Reads
|
|
0
|
32
|
June 20, 2025
|
|
Mamba installation
|
|
1
|
160
|
June 11, 2025
|
|
Bad id problem from bmtagger while running kneaddata v.0.7.10
|
|
3
|
2740
|
May 13, 2025
|
|
General Questions: Visualization
|
|
0
|
15
|
May 12, 2025
|
|
Kneaddata_database --download human_genome bowtie2
|
|
1
|
84
|
May 9, 2025
|
|
Conda for biobakery_workflow for 4.0.0a1
|
|
1
|
48
|
May 9, 2025
|
|
Annotation with phyla data
|
|
0
|
20
|
May 8, 2025
|
|
Issue with humann_regroup_table in biobakery_workflows wmgx
|
|
4
|
319
|
April 9, 2025
|
|
Unable to download and install Kneaddata database
|
|
21
|
2926
|
March 19, 2025
|
|
Empty paired files
|
|
3
|
123
|
March 14, 2025
|
|
Kneaddata - a non very explicit error message
|
|
4
|
1396
|
February 19, 2025
|
|
bioBakery workflows (wmgx) failing tasks
|
|
0
|
38
|
February 10, 2025
|
|
groups: invalid choice: 'uniref90_level4ec' (choose from 'uniref90_rxn', 'uniref50_rxn')\n"`
|
|
7
|
880
|
February 6, 2025
|
|
Wmgx_wmgt ERROR: task 17
|
|
0
|
21
|
February 6, 2025
|
|
The output of KneadData differs when threads are used
|
|
3
|
86
|
February 6, 2025
|
|
Biobakery_workflows : Broken hand-off of handling fastq compression between Kneaddata and MetaPhlan
|
|
1
|
30
|
February 5, 2025
|
|
AttributeError: Can't pickle local object 'ArgumentParser.__init__.<locals>.identity'
|
|
1
|
43
|
January 22, 2025
|
|
There are small unmatched reads in paired reads of kneaddata result
|
|
1
|
70
|
January 14, 2025
|