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About the Infrastructure/Utilities category
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2
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698
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May 15, 2020
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Empty paired files
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6
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163
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March 2, 2026
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Get_counts_from_humann_logs.py crashes with ValueError when MetaPhlAn 3.0.13 emits [WARNING] lines into HUMAnN log (biobakery_workflows 3.1)
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0
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13
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February 25, 2026
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Biobakery Workflow database
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4
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859
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February 24, 2026
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Analyzing single end and paired end reads together?
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0
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9
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February 20, 2026
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KneadData unmatched paired reads
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2
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34
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February 20, 2026
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Kneaddata Outputting Disordered Paired Reads
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1
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66
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February 5, 2026
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Biobakery wmgx_wmtx
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0
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23
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December 19, 2025
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Is KneadData recommended for mouse fecal shotgun metagenomic samples?
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2
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55
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December 17, 2025
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KneadData — Need clarification on the exact input file names used at each internal step
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1
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55
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November 7, 2025
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Biobakery workflows MetaPhlAn4 stucked
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0
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31
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October 27, 2025
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Can't install MelonnPan -- AssocTests no longer available
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5
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114
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October 15, 2025
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Access to Biobakery Galaxy unavailable
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0
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27
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October 7, 2025
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Grid Jobs Benchmarking
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0
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13
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October 3, 2025
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Custom Adapter Sequence in Kneaddata
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2
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66
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September 30, 2025
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Kneaddata output as input for metaphlan
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1
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41
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September 30, 2025
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Bowtie-2-build indexing fails
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0
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27
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September 1, 2025
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Is there an environment .yaml file for biobakery workflow?
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1
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16
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August 8, 2025
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Trouble installing MelonnPan
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1
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25
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July 18, 2025
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Kneaddata tar of human_genome uncompresses in subdirectory
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2
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58
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June 25, 2025
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Mamba installation
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1
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194
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June 11, 2025
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Bad id problem from bmtagger while running kneaddata v.0.7.10
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3
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2757
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May 13, 2025
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General Questions: Visualization
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0
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21
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May 12, 2025
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Kneaddata_database --download human_genome bowtie2
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1
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172
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May 9, 2025
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Conda for biobakery_workflow for 4.0.0a1
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1
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79
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May 9, 2025
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Annotation with phyla data
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0
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28
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May 8, 2025
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Issue with humann_regroup_table in biobakery_workflows wmgx
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4
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338
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April 9, 2025
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Unable to download and install Kneaddata database
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21
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3057
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March 19, 2025
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Kneaddata - a non very explicit error message
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4
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1415
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February 19, 2025
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bioBakery workflows (wmgx) failing tasks
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0
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54
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February 10, 2025
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