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About the Infrastructure/Utilities category
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2
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714
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May 15, 2020
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Issue with downloading the biobakery databases
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2
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17
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October 14, 2026
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Kneaddata contaminant database
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1
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20
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October 8, 2026
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Impossible to set --max-memory for Trimmomatic
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7
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115
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August 21, 2026
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Versions of datasets which are compatible with the latest docker image
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0
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24
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May 26, 2026
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Biobakery_workflows v4.0.0a1 uses deprecated HUMAnN UniRef build name (uniref90_diamond)
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0
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39
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May 24, 2026
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Adapter detection
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2
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70
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May 18, 2026
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Mismatched reads
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1
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29
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May 11, 2026
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bioBakery Database Download Failure (wmgx)
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0
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30
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May 6, 2026
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Empty paired files
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6
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228
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March 2, 2026
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Get_counts_from_humann_logs.py crashes with ValueError when MetaPhlAn 3.0.13 emits [WARNING] lines into HUMAnN log (biobakery_workflows 3.1)
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0
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34
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February 25, 2026
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Biobakery Workflow database
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4
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925
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February 24, 2026
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KneadData unmatched paired reads
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2
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80
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February 20, 2026
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Kneaddata Outputting Disordered Paired Reads
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1
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98
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February 5, 2026
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Biobakery wmgx_wmtx
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0
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43
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December 19, 2025
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Is KneadData recommended for mouse fecal shotgun metagenomic samples?
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2
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92
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December 17, 2025
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KneadData — Need clarification on the exact input file names used at each internal step
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1
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81
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November 7, 2025
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Biobakery workflows MetaPhlAn4 stucked
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0
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44
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October 27, 2025
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Can't install MelonnPan -- AssocTests no longer available
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5
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172
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October 15, 2025
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Access to Biobakery Galaxy unavailable
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0
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41
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October 7, 2025
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Grid Jobs Benchmarking
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0
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22
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October 3, 2025
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Custom Adapter Sequence in Kneaddata
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2
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112
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September 30, 2025
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Kneaddata output as input for metaphlan
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1
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75
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September 30, 2025
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Bowtie-2-build indexing fails
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0
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48
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September 1, 2025
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Is there an environment .yaml file for biobakery workflow?
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1
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40
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August 8, 2025
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Trouble installing MelonnPan
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1
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34
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July 18, 2025
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Kneaddata tar of human_genome uncompresses in subdirectory
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2
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89
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June 25, 2025
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Mamba installation
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1
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221
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June 11, 2025
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Bad id problem from bmtagger while running kneaddata v.0.7.10
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3
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2780
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May 13, 2025
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General Questions: Visualization
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0
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41
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May 12, 2025
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