|
About the Infrastructure/Utilities category
|
|
2
|
336
|
May 15, 2020
|
|
Long ugly file names of output files by Kneaddata
|
|
0
|
6
|
September 30, 2022
|
|
`pip install kneaddata` doesn't install dependencies
|
|
1
|
106
|
September 30, 2022
|
|
All paired-end read unmatched
|
|
5
|
500
|
September 29, 2022
|
|
Cannot find the bioBakery AMI in Amazon EC2
|
|
0
|
19
|
September 22, 2022
|
|
KneadData critical error in bowtie2_discordant_pairs
|
|
4
|
472
|
September 21, 2022
|
|
Could not find "makeblastdb" executable in your PATH environment
|
|
5
|
317
|
September 12, 2022
|
|
Human and metaphlan file formats
|
|
1
|
40
|
September 8, 2022
|
|
UnboundLocalError: local variable 'qmax' referenced before assignment
|
|
2
|
218
|
September 6, 2022
|
|
PR for an LSF Runner?
|
|
3
|
71
|
September 2, 2022
|
|
Any plans to update biobakery/workflows docker image with Metaphlan 4?
|
|
0
|
62
|
August 31, 2022
|
|
Python error when running kneaddata
|
|
0
|
27
|
August 30, 2022
|
|
Graphics card processor
|
|
0
|
24
|
August 23, 2022
|
|
Which version of pweave needed?
|
|
10
|
747
|
August 22, 2022
|
|
Error installing wmgx: biobakery_workflows_databases --install wmgx
|
|
8
|
935
|
August 22, 2022
|
|
Internal Bowtie 2 exception (#1) Error Downloading Biobakery_workflows reference databases
|
|
4
|
102
|
August 16, 2022
|
|
Galaxy server not loading
|
|
0
|
34
|
August 14, 2022
|
|
All task fails - Biobakery workflows wmgx
|
|
1
|
68
|
August 9, 2022
|
|
Biobakery Workflows: Errors with downloading database, "unpicking error", “topological_sort()" error, and "Unable to find Trimmomatic" error
|
|
6
|
1377
|
August 1, 2022
|
|
Error in rna_dna_norm.py code when mapping samples during wmgx_wmtx worfklow
|
|
0
|
31
|
July 19, 2022
|
|
Metaphlan3 to graphlan
|
|
0
|
58
|
July 17, 2022
|
|
Could not find "mafft" ("False")
|
|
0
|
50
|
July 15, 2022
|
|
Biobakery_Workflows wmgx: TypeError
|
|
6
|
927
|
July 5, 2022
|
|
Which reference DB should I use?
|
|
0
|
89
|
July 4, 2022
|
|
Biobakery conda install: can't run example data
|
|
0
|
77
|
June 30, 2022
|
|
Problems with Conda environment and biobakery_workflows in cluster
|
|
3
|
173
|
June 22, 2022
|
|
Kneaddata in shell script
|
|
1
|
89
|
June 21, 2022
|
|
Feature request for kneaddata: add option to compress output fastq files
|
|
2
|
152
|
June 13, 2022
|
|
Ring titles location relative to the tree
|
|
0
|
44
|
June 9, 2022
|
|
Kneaddata-Trimmomatic Permission Error
|
|
0
|
68
|
June 2, 2022
|