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About the Infrastructure/Utilities category
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2
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678
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May 15, 2020
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Optimal thread count for KneadData, Bowtie2, MetaPhlAn, and HUMAnN on multi-core systems
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0
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12
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September 3, 2025
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Bowtie-2-build indexing fails
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0
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4
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September 1, 2025
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Is there an environment .yaml file for biobakery workflow?
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1
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9
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August 8, 2025
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Can't install MelonnPan -- AssocTests no longer available
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4
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42
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August 2, 2025
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Trouble installing MelonnPan
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1
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10
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July 18, 2025
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Kneaddata tar of human_genome uncompresses in subdirectory
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2
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33
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June 25, 2025
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Kneaddata Outputting Disordered Paired Reads
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0
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22
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June 20, 2025
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Mamba installation
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1
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151
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June 11, 2025
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Bad id problem from bmtagger while running kneaddata v.0.7.10
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3
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2728
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May 13, 2025
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General Questions: Visualization
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0
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14
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May 12, 2025
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Kneaddata_database --download human_genome bowtie2
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1
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69
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May 9, 2025
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Conda for biobakery_workflow for 4.0.0a1
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1
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31
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May 9, 2025
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Annotation with phyla data
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0
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13
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May 8, 2025
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Custom Adapter Sequence in Kneaddata
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1
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29
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April 11, 2025
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Issue with humann_regroup_table in biobakery_workflows wmgx
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4
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311
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April 9, 2025
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Unable to download and install Kneaddata database
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21
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2906
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March 19, 2025
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Empty paired files
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3
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113
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March 14, 2025
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Kneaddata - a non very explicit error message
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4
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1382
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February 19, 2025
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bioBakery workflows (wmgx) failing tasks
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0
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22
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February 10, 2025
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groups: invalid choice: 'uniref90_level4ec' (choose from 'uniref90_rxn', 'uniref50_rxn')\n"`
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7
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861
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February 6, 2025
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Wmgx_wmgt ERROR: task 17
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0
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14
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February 6, 2025
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The output of KneadData differs when threads are used
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3
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78
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February 6, 2025
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Biobakery_workflows : Broken hand-off of handling fastq compression between Kneaddata and MetaPhlan
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1
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24
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February 5, 2025
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AttributeError: Can't pickle local object 'ArgumentParser.__init__.<locals>.identity'
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1
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30
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January 22, 2025
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There are small unmatched reads in paired reads of kneaddata result
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1
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64
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January 14, 2025
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Running biobakery wmgx with custom databases
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0
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26
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January 7, 2025
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The output of KneadData differs when threads are used
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0
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42
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January 9, 2025
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Citation please
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2
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82
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December 31, 2024
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All paired-end read unmatched
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34
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5763
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December 25, 2024
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