|
About the Infrastructure/Utilities category
|
|
2
|
713
|
May 15, 2020
|
|
Impossible to set --max-memory for Trimmomatic
|
|
7
|
96
|
August 21, 2026
|
|
Versions of datasets which are compatible with the latest docker image
|
|
0
|
21
|
May 26, 2026
|
|
Biobakery_workflows v4.0.0a1 uses deprecated HUMAnN UniRef build name (uniref90_diamond)
|
|
0
|
34
|
May 24, 2026
|
|
Adapter detection
|
|
2
|
65
|
May 18, 2026
|
|
Mismatched reads
|
|
1
|
27
|
May 11, 2026
|
|
bioBakery Database Download Failure (wmgx)
|
|
0
|
28
|
May 6, 2026
|
|
Empty paired files
|
|
6
|
221
|
March 2, 2026
|
|
Get_counts_from_humann_logs.py crashes with ValueError when MetaPhlAn 3.0.13 emits [WARNING] lines into HUMAnN log (biobakery_workflows 3.1)
|
|
0
|
31
|
February 25, 2026
|
|
Biobakery Workflow database
|
|
4
|
913
|
February 24, 2026
|
|
KneadData unmatched paired reads
|
|
2
|
70
|
February 20, 2026
|
|
Kneaddata Outputting Disordered Paired Reads
|
|
1
|
94
|
February 5, 2026
|
|
Biobakery wmgx_wmtx
|
|
0
|
42
|
December 19, 2025
|
|
Is KneadData recommended for mouse fecal shotgun metagenomic samples?
|
|
2
|
88
|
December 17, 2025
|
|
KneadData — Need clarification on the exact input file names used at each internal step
|
|
1
|
79
|
November 7, 2025
|
|
Biobakery workflows MetaPhlAn4 stucked
|
|
0
|
43
|
October 27, 2025
|
|
Can't install MelonnPan -- AssocTests no longer available
|
|
5
|
157
|
October 15, 2025
|
|
Access to Biobakery Galaxy unavailable
|
|
0
|
40
|
October 7, 2025
|
|
Grid Jobs Benchmarking
|
|
0
|
22
|
October 3, 2025
|
|
Custom Adapter Sequence in Kneaddata
|
|
2
|
105
|
September 30, 2025
|
|
Kneaddata output as input for metaphlan
|
|
1
|
72
|
September 30, 2025
|
|
Bowtie-2-build indexing fails
|
|
0
|
48
|
September 1, 2025
|
|
Is there an environment .yaml file for biobakery workflow?
|
|
1
|
37
|
August 8, 2025
|
|
Trouble installing MelonnPan
|
|
1
|
34
|
July 18, 2025
|
|
Kneaddata tar of human_genome uncompresses in subdirectory
|
|
2
|
83
|
June 25, 2025
|
|
Mamba installation
|
|
1
|
219
|
June 11, 2025
|
|
Bad id problem from bmtagger while running kneaddata v.0.7.10
|
|
3
|
2776
|
May 13, 2025
|
|
General Questions: Visualization
|
|
0
|
38
|
May 12, 2025
|
|
Kneaddata_database --download human_genome bowtie2
|
|
1
|
218
|
May 9, 2025
|
|
Conda for biobakery_workflow for 4.0.0a1
|
|
1
|
104
|
May 9, 2025
|