Is there an environment .yaml file for biobakery workflow?

Infrastructure and utilities
1

Hello,

I’m a beginner just getting started with shotgun metagenomic analysis using BioBakery.
I’ve been following the tutorial provided in the BioBakery Workflows GitHub repository, but I keep encountering errors related to dependency issues.

Could anyone share a working .yaml file to set up the appropriate conda environment?
Also, I’m curious—do most of you install the required modules individually, or do you use the full biobakery_workflows setup?

2

Hi @pickyseok ,

Please feel free to check out the conda meta.yaml file here conda-biobakery/recipes/biobakery_workflows/meta.yaml at master · biobakery/conda-biobakery · GitHub

Regards,
Sagun