Hello, I have been trying to create an environment with biobakery workflows.
When trying to use conda I get the following error:
'conda create -n biobakery -c biobakery biobakery_workflows'
Traceback (most recent call last):
File "/home/bench-user/.apps/conda/lib/python3.10/site-packages/conda/gateways/repodata/__init__.py", line 161, in conda_http_errors
yield
File "/home/bench-user/.apps/conda/lib/python3.10/site-packages/conda/gateways/repodata/__init__.py", line 127, in repodata
response.raise_for_status()
File "/home/bench-user/.apps/conda/lib/python3.10/site-packages/requests/models.py", line 1021, in raise_for_status
raise HTTPError(http_error_msg, response=self)
requests.exceptions.HTTPError: 404 Client Error: Not Found for url: https://conda.anaconda.org/biobakery/linux-64/current_repodata.json
So I tried to install pip. But then the error is in the DB:
Unable to find database KNEADDATA_DB_HUMAN_GENOME
I tried to setup the DB location using the code below, without success
KNEADDATA_DB_HUMAN_GENOME=/home/biobakery/biobakery_workflows/kneaddata_db_human_genome
Can I get help to get the pipeline setup please.