Describe the bug
Mamba installation - transaction Error
Please suggest whether this error affects the results or not?
Thanks for your great efforts to develop mpa (I’ve been using it for more than 4 year since mpa2)
Screenshots
Here is the error report (pic). But the installed metaphlan still works.
Platform (please complete the following information):
Version:
MetaPhlAn version 4.1.0 (23 Aug 2023)
Download source:
mamba create -n mpa4 -c conda-forge -c bioconda python=3.7 metaphlan
Additional context
The conda installation is too (Unbearable) slow…
The pip installed metaphlen encounters NO issue (suggested):
(1) installation:
conda create --name mpa
conda activate mpa
pip install metaphlan
conda install bioconda::bowtie2 (pip install not successfull)
(2) test run:
metaphlan Win.TSwstu03.hrm_1.fastq,Win.TSwstu03.hrm_2.fastq --bowtie2out metagenome.bowtie2.bz2 --nproc 50 --input_type fastq -o profiled_metagenome.txt --bowtie2db /home/dell/Database/MetaPhlAn4
(3) version: 4.1.0 (23 Aug 2023)