Hi all
I am trying to install MetaPhlAn and I am getting this error
conda create --name mpa -c bioconda python=3.7 metaphlan
Collecting package metadata (current_repodata.json): done
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: -
Found conflicts! Looking for incompatible packages.
This can take several minutes. Press CTRL-C to abort.
failed
UnsatisfiableError: The following specifications were found to be incompatible with each other:
Output in format: Requested package → Available versions
Package python conflicts for:
python=3.7
metaphlan → python[version=‘2.7.|>=3|>=3.7’]
metaphlan → biom-format → python[version='3.4.|3.5.|3.6.|>=2.7,<2.8.0a0|>=3.5,<3.6.0a0|>=3.6,<3.7.0a0|>=3.11,<3.12.0a0|>=3.10,<3.11.0a0|>=3.9,<3.10.0a0|>=3.8,<3.9.0a0|>=3.7,<3.8.0a0|>=2.7,<3|>=3.7.1,<3.8.0a0|<3.0.0|>=3.6’]The following specifications were found to be incompatible with your system:
feature:/linux-64::__glibc==2.27=0
feature:|@/linux-64::__glibc==2.27=0
Your installed version is: 2.27
However, when I checked the Python --version it shows python 3.8.13
Kindly suggest
I’m having a similar issue about glibc (pythong version was fine).
$ conda create --name biobakery3 python=3.7
$ conda activate biobakery3
(biobakery3)$ conda install -c bioconda metaphlan=4.0.6
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: |
Found conflicts! Looking for incompatible packages.
This can take several minutes. Press CTRL-C to abort.
failed
UnsatisfiableError: The following specifications were found to be incompatible with each other:
Output in format: Requested package → Available versionsThe following specifications were found to be incompatible with your system:
Hi @fanhuan
Dud you got the error fixed.
I am trying an alternative way by installing biobakery_workflows
But that again gives me error.
Meanwhile I am waiting for the reply from the group members and experts in the groups.
Hi @Makio
Thank you for your reply.
No I didn’t,
I was trying other way by installing biobakery_workflows. But got error
metaphlan --install --index mpa_vJan21_CHOCOPhlAnSGB_202103 --bowtie2db bowtie2
Downloading MetaPhlAn database
Please note due to the size this might take a few minutes
Hi@ Makio
thank you so much for your prompt response First : Do you mean after manual installation, I should run the example dataset to test the environment Second: please share the link for vOct22
Regards