Microbial community profiling MetaPhlAn
| Topic | Replies | Views | Activity | |
|---|---|---|---|---|
|
Announcing MetaPhlAn 4.1.1 release
Announcement: We are pleased to share that MetaPhlAn 4.1.1 is now available, which provides fixed and consistent taxonomic identification at high taxonomic ranks, allowing accurate relative abundance estimation also at h… |
|
4 | 685 | December 31, 2024 |
|
Announcing MetaPhlAn 4
MetaPhlAn 4 Release Notes The new MetaPhlAn 4 integrates information from both metagenome assemblies and microbial isolate genomes for improved and more comprehensive metagenomic taxonomic profiling (https://doi.org/10.… |
|
7 | 4184 | June 8, 2023 |
|
Announcing MetaPhlAn 3.1
MetaPhlAn 3.1 / HUMAnN 3.1 Release Notes MetaPhlAn 3.1 and HUMAnN 3.1 represent a moderate update to the bioBakery 3 software and databases. This update is based on improvements in our ability to align NCBI-sourced micr… |
|
2 | 968 | August 4, 2022 |
|
Kluyveromyces marxianus is not found in MetaPhlan4 database
|
|
2 | 21 | January 15, 2025 |
|
MetaPhlAn4 database missing Citrobacter species?
|
|
0 | 9 | January 14, 2025 |
|
Metaphlan database problem
|
|
0 | 28 | January 3, 2025 |
|
Possible to get combined profile output instead of R1 and R2 profiles?
|
|
1 | 7 | January 10, 2025 |
|
Zero handling for CLR-transformation of relative abundance from MetaPhlAn
|
|
0 | 20 | January 3, 2025 |
|
cFMD dataset in ChocoPhlAn
|
|
0 | 8 | January 8, 2025 |
|
Update for sgb to GTDB Translation File - r220
|
|
2 | 58 | January 7, 2025 |
|
calculate_diversity.R Issues
|
|
3 | 23 | December 16, 2024 |
|
Profile VSC without profiling Bacteria?
|
|
1 | 28 | December 12, 2024 |
|
Unable to download the CHOCOPhlAnSGB.md5 and other dataset
|
|
1 | 26 | December 12, 2024 |
|
Downloading metaphlan4 SGB genomes
|
|
2 | 65 | December 4, 2024 |
|
MetaPhlAn 4.1 virome module not identifying known viruses
|
|
1 | 116 | November 15, 2024 |
|
Recommended align two fastq files that have different amount of reads
|
|
1 | 18 | November 8, 2024 |
|
Running MetaPhlAn4.1 to detect both virus and bacteria
|
|
1 | 47 | November 8, 2024 |
|
Virus detection with metaphlan 4.1
|
|
3 | 136 | November 8, 2024 |
|
Issue with running StrainPhlAn 4.1 - Error in running ample2markers.py
|
|
2 | 161 | October 24, 2024 |
|
Strain-Level Abundance using MetaPhlAn4 or StrainPhlAn
|
|
0 | 30 | October 4, 2024 |
|
Nreads of bowtie2 file
|
|
5 | 287 | October 1, 2024 |
|
Can we add a column with the number of reads for each taxon next to relative_abundance?
|
|
6 | 398 | September 26, 2024 |
|
Constructing phylogenetic tree
|
|
7 | 602 | September 25, 2024 |
|
Metaphlan unclassified output
|
|
2 | 78 | September 25, 2024 |
|
Deviation in Standard Reference Annotation Results of Metaphlan4
|
|
1 | 25 | September 24, 2024 |
|
Bacteroidota or bacteroidetes
|
|
4 | 44 | September 24, 2024 |
|
MetaPhlAn 4.0 is missing the list of marker genes
|
|
1 | 29 | September 24, 2024 |
|
Strain-Level Abundance: MetaPhlAn2 vs. Newer Versions?
|
|
0 | 32 | September 23, 2024 |
|
Unable to download MetaPhlAn 4 database
|
|
0 | 243 | April 2, 2024 |
|
Shared taxonomy ID by multiple species in Segatella
|
|
0 | 24 | September 5, 2024 |