Microbial community profiling MetaPhlAn
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Announcing MetaPhlAn 4.1.1 release
Announcement: We are pleased to share that MetaPhlAn 4.1.1 is now available, which provides fixed and consistent taxonomic identification at high taxonomic ranks, allowing accurate relative abundance estimation also at h… |
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3 | 576 | August 1, 2024 |
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Announcing MetaPhlAn 4
MetaPhlAn 4 Release Notes The new MetaPhlAn 4 integrates information from both metagenome assemblies and microbial isolate genomes for improved and more comprehensive metagenomic taxonomic profiling (https://doi.org/10.… |
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7 | 4138 | June 8, 2023 |
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Announcing MetaPhlAn 3.1
MetaPhlAn 3.1 / HUMAnN 3.1 Release Notes MetaPhlAn 3.1 and HUMAnN 3.1 represent a moderate update to the bioBakery 3 software and databases. This update is based on improvements in our ability to align NCBI-sourced micr… |
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2 | 961 | August 4, 2022 |
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Combine two separate MetaPhlan4 outputs or rerun all together?
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0 | 7 | November 5, 2024 |
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Issue with running StrainPhlAn 4.1 - Error in running ample2markers.py
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2 | 154 | October 24, 2024 |
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Downloading metaphlan4 SGB genomes
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0 | 17 | October 23, 2024 |
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Virus detection with metaphlan 4.1
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2 | 101 | October 17, 2024 |
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Running MetaPhlAn4.1 to detect both virus and bacteria
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0 | 19 | October 7, 2024 |
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Strain-Level Abundance using MetaPhlAn4 or StrainPhlAn
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0 | 17 | October 4, 2024 |
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Nreads of bowtie2 file
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5 | 282 | October 1, 2024 |
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Can we add a column with the number of reads for each taxon next to relative_abundance?
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6 | 386 | September 26, 2024 |
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Constructing phylogenetic tree
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7 | 581 | September 25, 2024 |
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Metaphlan unclassified output
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2 | 47 | September 25, 2024 |
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Deviation in Standard Reference Annotation Results of Metaphlan4
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1 | 19 | September 24, 2024 |
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Bacteroidota or bacteroidetes
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4 | 31 | September 24, 2024 |
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MetaPhlAn 4.0 is missing the list of marker genes
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1 | 23 | September 24, 2024 |
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Strain-Level Abundance: MetaPhlAn2 vs. Newer Versions?
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0 | 22 | September 23, 2024 |
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Recommended align two fastq files that have different amount of reads
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0 | 11 | September 17, 2024 |
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Unable to download MetaPhlAn 4 database
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0 | 220 | April 2, 2024 |
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Shared taxonomy ID by multiple species in Segatella
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0 | 17 | September 5, 2024 |
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Metaphlan4 calculate_diversity.R error
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7 | 1195 | August 29, 2024 |
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MetaPhlAn viral module
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0 | 41 | August 22, 2024 |
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Update for sgb to GTDB Translation File - r220
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0 | 29 | August 20, 2024 |
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Metaphlan4 Classification Error
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0 | 23 | August 14, 2024 |
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WARNING: MetaPhlAn did not detect any microbial taxa in the sample
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2 | 100 | August 12, 2024 |
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Announcing MetaPhlAn 4.1 release (new virome database and SGB database update)
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10 | 1905 | May 27, 2024 |
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Percentage of classification
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0 | 21 | July 31, 2024 |
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Auto-updating database seems to break MetaPhlAn4
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4 | 210 | July 17, 2024 |
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Question about calculate_diversity.R
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5 | 686 | July 16, 2024 |
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Metaphlan4_database problem
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0 | 52 | July 15, 2024 |