MetaPhlAn

Topic	Replies	Views	Activity
Announcing MetaPhlAn 4 MetaPhlAn 4 Release Notes The new MetaPhlAn 4 integrates information from both metagenome assemblies and microbial isolate genomes for improved and more comprehensive metagenomic taxonomic profiling (https://doi.org/10.…	7	2766	June 8, 2023
Announcing MetaPhlAn 3.1 MetaPhlAn 3.1 / HUMAnN 3.1 Release Notes MetaPhlAn 3.1 and HUMAnN 3.1 represent a moderate update to the bioBakery 3 software and databases. This update is based on improvements in our ability to align NCBI-sourced micr…	2	629	August 4, 2022
Question on uSGB	0	8	September 28, 2023
Too many SGB or other unclassified species when processing mouse metagenomic samples	0	24	September 25, 2023
MetaPhlAn 4 database	1	88	September 22, 2023
Grepping genus abundance table	1	34	September 22, 2023
How to create absolute abundance tables at family, genus, class and phylum levels	3	311	September 22, 2023
Use Torrent to host and download MetaPhlAn database	1	31	September 22, 2023
Metaphlan4 tree for unifrac etc	3	289	September 22, 2023
Metaphlan output file to be used as input for humann3 functional analysis	1	55	September 22, 2023
NOT getting to run MetaPhlAn	1	45	September 22, 2023
Issue running metaphlan4 BadGzipFile	1	32	September 22, 2023
Metaphlan4 and the new version humann	11	1877	September 22, 2023
Sgb_to_gtdb_profile.py keep read count estimation from -t rel_ab_w_read_stats	2	72	September 18, 2023
MetaPhlAn4 can not profile eukaryote?	4	164	September 1, 2023
MetaPhlAn4 overestimates the abundance of Veillonella rogosae	1	57	September 1, 2023
Cannot reproduce results of MetaPhlAn 4.0 tutorial	4	91	September 1, 2023
Confusing Instructions About Strain Analysis Using MetaPhlAn	2	400	September 1, 2023
Error - invalid start byte - Metaphlan3	4	434	September 1, 2023
Can we add a column with the number of reads for each taxon next to relative_abundance?	3	97	September 1, 2023
hclust2_ValueError: Passing a Normalize instance simultaneously with vmin/vmax is not supported. Please pass vmin/vmax directly to the norm when creating it	4	1351	September 1, 2023
MetaPhlAn 4 for paired end reads of multiple samples	4	548	August 30, 2023
Error in MetaPhlAn installation	8	165	August 28, 2023
MetaPhlAn4 issue with example files	3	84	August 25, 2023
Metaphlan ignores provided bowtie DB	1	253	August 24, 2023
Inquiry regarding MetaPhlAn SGBs phylogenetic tree	16	651	August 11, 2023
All unclassified with Metaphlan4	2	107	August 4, 2023
MetaPhlAn4 nproc effect	1	69	August 4, 2023
MetaPhlan4 no Acidobacteria	4	157	August 4, 2023
Metaphlan3 relative abundance	13	4945	July 31, 2023

Announcing MetaPhlAn 4

MetaPhlAn 4 Release Notes The new MetaPhlAn 4 integrates information from both metagenome assemblies and microbial isolate genomes for improved and more comprehensive metagenomic taxonomic profiling (https://doi.org/10.…

7

2766

June 8, 2023

Announcing MetaPhlAn 3.1

MetaPhlAn 3.1 / HUMAnN 3.1 Release Notes MetaPhlAn 3.1 and HUMAnN 3.1 represent a moderate update to the bioBakery 3 software and databases. This update is based on improvements in our ability to align NCBI-sourced micr…