Microbial community profiling MetaPhlAn
| Topic | Replies | Views | Activity | |
|---|---|---|---|---|
|
Announcing MetaPhlAn 4.1.1 release
Announcement: We are pleased to share that MetaPhlAn 4.1.1 is now available, which provides fixed and consistent taxonomic identification at high taxonomic ranks, allowing accurate relative abundance estimation also at h… |
|
5 | 918 | March 30, 2025 |
|
Announcing MetaPhlAn 4
MetaPhlAn 4 Release Notes The new MetaPhlAn 4 integrates information from both metagenome assemblies and microbial isolate genomes for improved and more comprehensive metagenomic taxonomic profiling (https://doi.org/10.… |
|
7 | 4260 | June 8, 2023 |
|
Announcing MetaPhlAn 3.1
MetaPhlAn 3.1 / HUMAnN 3.1 Release Notes MetaPhlAn 3.1 and HUMAnN 3.1 represent a moderate update to the bioBakery 3 software and databases. This update is based on improvements in our ability to align NCBI-sourced micr… |
|
2 | 982 | August 4, 2022 |
|
Error in merge_metaphlan_tables.py
|
|
1 | 12 | May 19, 2025 |
|
MetaPhlan4 drastically underestimate the abundance of Bacillus_subtilis|t__SGB7788
|
|
5 | 477 | May 7, 2025 |
|
MetaPhlAn did not detect any taxa in the tutorial sample
|
|
0 | 14 | April 28, 2025 |
|
Metaphlan4 Unknown taxa 70%
|
|
0 | 40 | April 2, 2025 |
|
Criteria of newick file in MetaPhlAn github
|
|
0 | 14 | April 1, 2025 |
|
Scientific names not found in NCBI Taxonomy Browser
|
|
3 | 424 | March 31, 2025 |
|
MetaPhlAn 4.x Support for Long Reads?
|
|
1 | 49 | March 27, 2025 |
|
Unable to replicate results from Metaphlan 4 tutorial
|
|
0 | 15 | March 19, 2025 |
|
MetaPhlan parameters for metatranscriptomics data
|
|
0 | 14 | March 6, 2025 |
|
Duplicate Species Entries with and without SGB Annotation
|
|
0 | 25 | February 22, 2025 |
|
Database issues with humann3 and metaphlan
|
|
1 | 59 | February 13, 2025 |
|
Plot_tree_graphlan
|
|
0 | 11 | February 15, 2025 |
|
HUMAnN3: single-end reads equal to 50 bp, resulting in zero species
|
|
0 | 18 | February 11, 2025 |
|
Marker genes are protein-coding?
|
|
0 | 14 | February 5, 2025 |
|
Update for sgb to GTDB Translation File - r220
|
|
4 | 126 | February 3, 2025 |
|
How to use metaphlan output
|
|
1 | 65 | February 2, 2025 |
|
Metaphlan database problem
|
|
2 | 102 | January 23, 2025 |
|
MetaPhlan 4 can not found BowTie2 database
|
|
3 | 757 | January 22, 2025 |
|
Possible to get combined profile output instead of R1 and R2 profiles?
|
|
2 | 19 | January 17, 2025 |
|
cFMD dataset in ChocoPhlAn
|
|
1 | 21 | January 17, 2025 |
|
Kluyveromyces marxianus is not found in MetaPhlan4 database
|
|
2 | 36 | January 15, 2025 |
|
MetaPhlAn4 database missing Citrobacter species?
|
|
0 | 33 | January 14, 2025 |
|
Zero handling for CLR-transformation of relative abundance from MetaPhlAn
|
|
0 | 41 | January 3, 2025 |
|
calculate_diversity.R Issues
|
|
3 | 48 | December 16, 2024 |
|
Profile VSC without profiling Bacteria?
|
|
1 | 39 | December 12, 2024 |
|
Unable to download the CHOCOPhlAnSGB.md5 and other dataset
|
|
1 | 45 | December 12, 2024 |
|
Downloading metaphlan4 SGB genomes
|
|
2 | 89 | December 4, 2024 |