Microbial community profiling MetaPhlAn
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Announcing MetaPhlAn 4.1.1 release
Announcement: We are pleased to share that MetaPhlAn 4.1.1 is now available, which provides fixed and consistent taxonomic identification at high taxonomic ranks, allowing accurate relative abundance estimation also at h… |
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5 | 918 | March 30, 2025 |
Announcing MetaPhlAn 4
MetaPhlAn 4 Release Notes The new MetaPhlAn 4 integrates information from both metagenome assemblies and microbial isolate genomes for improved and more comprehensive metagenomic taxonomic profiling (https://doi.org/10.… |
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7 | 4260 | June 8, 2023 |
Announcing MetaPhlAn 3.1
MetaPhlAn 3.1 / HUMAnN 3.1 Release Notes MetaPhlAn 3.1 and HUMAnN 3.1 represent a moderate update to the bioBakery 3 software and databases. This update is based on improvements in our ability to align NCBI-sourced micr… |
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2 | 982 | August 4, 2022 |
Error in merge_metaphlan_tables.py
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1 | 12 | May 19, 2025 |
MetaPhlan4 drastically underestimate the abundance of Bacillus_subtilis|t__SGB7788
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5 | 477 | May 7, 2025 |
MetaPhlAn did not detect any taxa in the tutorial sample
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0 | 14 | April 28, 2025 |
Metaphlan4 Unknown taxa 70%
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0 | 40 | April 2, 2025 |
Criteria of newick file in MetaPhlAn github
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0 | 14 | April 1, 2025 |
Scientific names not found in NCBI Taxonomy Browser
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3 | 424 | March 31, 2025 |
MetaPhlAn 4.x Support for Long Reads?
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1 | 49 | March 27, 2025 |
Unable to replicate results from Metaphlan 4 tutorial
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0 | 15 | March 19, 2025 |
MetaPhlan parameters for metatranscriptomics data
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0 | 14 | March 6, 2025 |
Duplicate Species Entries with and without SGB Annotation
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0 | 25 | February 22, 2025 |
Database issues with humann3 and metaphlan
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1 | 59 | February 13, 2025 |
Plot_tree_graphlan
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0 | 11 | February 15, 2025 |
HUMAnN3: single-end reads equal to 50 bp, resulting in zero species
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0 | 18 | February 11, 2025 |
Marker genes are protein-coding?
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0 | 14 | February 5, 2025 |
Update for sgb to GTDB Translation File - r220
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4 | 126 | February 3, 2025 |
How to use metaphlan output
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1 | 65 | February 2, 2025 |
Metaphlan database problem
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2 | 102 | January 23, 2025 |
MetaPhlan 4 can not found BowTie2 database
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3 | 757 | January 22, 2025 |
Possible to get combined profile output instead of R1 and R2 profiles?
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2 | 19 | January 17, 2025 |
cFMD dataset in ChocoPhlAn
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1 | 21 | January 17, 2025 |
Kluyveromyces marxianus is not found in MetaPhlan4 database
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2 | 36 | January 15, 2025 |
MetaPhlAn4 database missing Citrobacter species?
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0 | 33 | January 14, 2025 |
Zero handling for CLR-transformation of relative abundance from MetaPhlAn
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0 | 41 | January 3, 2025 |
calculate_diversity.R Issues
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3 | 48 | December 16, 2024 |
Profile VSC without profiling Bacteria?
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1 | 39 | December 12, 2024 |
Unable to download the CHOCOPhlAnSGB.md5 and other dataset
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1 | 45 | December 12, 2024 |
Downloading metaphlan4 SGB genomes
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2 | 89 | December 4, 2024 |