Microbial community profiling MetaPhlAn
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Announcing MetaPhlAn 4.1.1 release
Announcement: We are pleased to share that MetaPhlAn 4.1.1 is now available, which provides fixed and consistent taxonomic identification at high taxonomic ranks, allowing accurate relative abundance estimation also at h… |
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5 | 884 | March 30, 2025 |
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Announcing MetaPhlAn 4
MetaPhlAn 4 Release Notes The new MetaPhlAn 4 integrates information from both metagenome assemblies and microbial isolate genomes for improved and more comprehensive metagenomic taxonomic profiling (https://doi.org/10.… |
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7 | 4246 | June 8, 2023 |
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Announcing MetaPhlAn 3.1
MetaPhlAn 3.1 / HUMAnN 3.1 Release Notes MetaPhlAn 3.1 and HUMAnN 3.1 represent a moderate update to the bioBakery 3 software and databases. This update is based on improvements in our ability to align NCBI-sourced micr… |
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2 | 980 | August 4, 2022 |
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Metaphlan4 Unknown taxa 70%
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0 | 27 | April 2, 2025 |
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Criteria of newick file in MetaPhlAn github
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0 | 10 | April 1, 2025 |
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Scientific names not found in NCBI Taxonomy Browser
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3 | 420 | March 31, 2025 |
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MetaPhlAn 4.x Support for Long Reads?
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1 | 40 | March 27, 2025 |
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Unable to replicate results from Metaphlan 4 tutorial
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0 | 9 | March 19, 2025 |
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MetaPhlan parameters for metatranscriptomics data
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0 | 12 | March 6, 2025 |
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Duplicate Species Entries with and without SGB Annotation
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0 | 24 | February 22, 2025 |
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Database issues with humann3 and metaphlan
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1 | 55 | February 13, 2025 |
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Plot_tree_graphlan
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0 | 11 | February 15, 2025 |
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HUMAnN3: single-end reads equal to 50 bp, resulting in zero species
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0 | 16 | February 11, 2025 |
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Marker genes are protein-coding?
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0 | 12 | February 5, 2025 |
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Update for sgb to GTDB Translation File - r220
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4 | 122 | February 3, 2025 |
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How to use metaphlan output
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1 | 58 | February 2, 2025 |
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Metaphlan database problem
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2 | 99 | January 23, 2025 |
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MetaPhlan 4 can not found BowTie2 database
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3 | 753 | January 22, 2025 |
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Possible to get combined profile output instead of R1 and R2 profiles?
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2 | 18 | January 17, 2025 |
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cFMD dataset in ChocoPhlAn
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1 | 19 | January 17, 2025 |
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Kluyveromyces marxianus is not found in MetaPhlan4 database
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2 | 33 | January 15, 2025 |
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MetaPhlAn4 database missing Citrobacter species?
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0 | 33 | January 14, 2025 |
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Zero handling for CLR-transformation of relative abundance from MetaPhlAn
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0 | 38 | January 3, 2025 |
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calculate_diversity.R Issues
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3 | 44 | December 16, 2024 |
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Profile VSC without profiling Bacteria?
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1 | 39 | December 12, 2024 |
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Unable to download the CHOCOPhlAnSGB.md5 and other dataset
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1 | 40 | December 12, 2024 |
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Downloading metaphlan4 SGB genomes
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2 | 89 | December 4, 2024 |
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MetaPhlAn 4.1 virome module not identifying known viruses
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1 | 127 | November 15, 2024 |
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Recommended align two fastq files that have different amount of reads
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1 | 25 | November 8, 2024 |
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Running MetaPhlAn4.1 to detect both virus and bacteria
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1 | 67 | November 8, 2024 |