MetaPhlAn

Topic	Replies	Views	Activity
Announcing MetaPhlAn 4 MetaPhlAn 4 Release Notes The new MetaPhlAn 4 integrates information from both metagenome assemblies and microbial isolate genomes for improved and more comprehensive metagenomic taxonomic profiling (https://doi.org/10.…	6	1015	November 25, 2022
Announcing MetaPhlAn 3.1 MetaPhlAn 3.1 / HUMAnN 3.1 Release Notes MetaPhlAn 3.1 and HUMAnN 3.1 represent a moderate update to the bioBakery 3 software and databases. This update is based on improvements in our ability to align NCBI-sourced micr…	2	254	August 4, 2022
Inquiry about the minimum number of input reads	0	5	December 8, 2022
hclust2_ValueError: Passing a Normalize instance simultaneously with vmin/vmax is not supported. Please pass vmin/vmax directly to the norm when creating it	2	29	December 7, 2022
Merge_metaphlan_tables.py with rel_ab_w_read_stats	3	415	December 7, 2022
Metaphlan not creating txt file	6	17	December 7, 2022
Inquiry regarding MetaPhlAn SGBs phylogenetic tree	9	63	December 6, 2022
Is "read_fastx.py" wrong in computing multi-file avg_read_length?	3	13	December 6, 2022
Metaphlan4 --mpa3 --add_viruses failed	1	84	December 6, 2022
Metaphlan4 calculate_diversity.R error	4	77	December 6, 2022
What does the seperate "-" in bowtie2 command mean?	1	7	December 6, 2022
FileNotFoundError: [Errno 2] No such file or directory: ‘bowtie2-build’	1	21	December 6, 2022
Metaphlan install error with pip	3	303	December 6, 2022
FileNotFoundError: [Errno 2] No such file or directory: 'bowtie2-build'	2	544	December 6, 2022
Difficulty indexing reference database for metaphlan4	3	32	December 6, 2022
Merge_metaphlan_tables.py with absolute abundance	17	1050	December 2, 2022
metaphlan2.py ERROR: Unable to create folder for database install	1	222	December 2, 2022
Clear guidance needed for comparing across samples with varying sequencing depth	14	303	December 1, 2022
Use "marker2reads" directly	1	16	November 30, 2022
Metaphlan4- can I keep the NCBI_tax_id in the merged_abundance_table?	1	32	November 30, 2022
Would MetaPhlAn support PE mapping in future version?	8	36	November 30, 2022
High Memory Usage of sample2markers.py	6	40	November 30, 2022
Missing bacterial species in Metaphlan4	1	96	November 28, 2022
Too many unclassified reads?	3	49	November 28, 2022
Metaphlan - ConStrains	1	17	November 25, 2022
How to install the latest metaphlan reference DB?	12	595	November 25, 2022
Unable to use MetaPhlAn-4 database	1	36	November 25, 2022
Finding specific sequences in the database	1	24	November 21, 2022
Metaphlan3 keeps giving an UNKNOWN 100 output	13	216	November 21, 2022
Alternative SGB2GTDB for SGBXXX_group	1	20	November 21, 2022

Announcing MetaPhlAn 4

MetaPhlAn 4 Release Notes The new MetaPhlAn 4 integrates information from both metagenome assemblies and microbial isolate genomes for improved and more comprehensive metagenomic taxonomic profiling (https://doi.org/10.…

6

1015

November 25, 2022

Announcing MetaPhlAn 3.1

MetaPhlAn 3.1 / HUMAnN 3.1 Release Notes MetaPhlAn 3.1 and HUMAnN 3.1 represent a moderate update to the bioBakery 3 software and databases. This update is based on improvements in our ability to align NCBI-sourced micr…