Microbial community profiling   MetaPhlAn


Topic Replies Views Activity
Announcing MetaPhlAn 4

MetaPhlAn 4 Release Notes The new MetaPhlAn 4 integrates information from both metagenome assemblies and microbial isolate genomes for improved and more comprehensive metagenomic taxonomic profiling (https://doi.org/10.…

6 921 November 25, 2022
Announcing MetaPhlAn 3.1

MetaPhlAn 3.1 / HUMAnN 3.1 Release Notes MetaPhlAn 3.1 and HUMAnN 3.1 represent a moderate update to the bioBakery 3 software and databases. This update is based on improvements in our ability to align NCBI-sourced micr…

2 240 August 4, 2022
Clear guidance needed for comparing across samples with varying sequencing depth
13 257 November 28, 2022
Inquiry regarding MetaPhlAn SGBs phylogenetic tree
4 18 November 28, 2022
Missing bacterial species in Metaphlan4
1 71 November 28, 2022
Would MetaPhlAn support PE mapping in future version?
3 22 November 28, 2022
Too many unclassified reads?
3 33 November 28, 2022
Metaphlan - ConStrains
1 13 November 25, 2022
How to install the latest metaphlan reference DB?
12 512 November 25, 2022
Unable to use MetaPhlAn-4 database
1 18 November 25, 2022
Finding specific sequences in the database
1 19 November 21, 2022
Metaphlan3 keeps giving an UNKNOWN 100 output
13 207 November 21, 2022
Alternative SGB2GTDB for SGBXXX_group
1 17 November 21, 2022
ValueError: Unable to find binary or script `metaphlan'
7 53 November 21, 2022
Use bowtie2 "--no-head" to replace "if" statement
2 15 November 14, 2022
Gzip fastq as input
15 635 November 11, 2022
High Memory Usage of sample2markers.py
4 33 November 11, 2022
Merge_metaphlan_tables.py with absolute abundance
16 999 November 11, 2022
Merge_metaphlan_table.py Error
1 32 November 6, 2022
Metaphlan4 BrokenPipeError
1 22 November 2, 2022
[BUG] Running MetaPhlAn from SAM input fails to the type of the variable "n_metagenome_reads"
3 30 October 30, 2022
MetaPhlan4 No MetaPhlAn BowTie2 database found
2 93 October 26, 2022
Unexpected difference with very-sensitive-local for environmental sample
1 46 October 26, 2022
Metaphla4 rel_ab_w_read_stats issue
3 62 October 26, 2022
Metaphlan4 discordance between relative_abundance and estimated_number_of_reads
6 87 October 26, 2022
Error running MetaPhlAn4 - no_map error and sam file cannot be found
0 38 October 20, 2022
Metaphlan Hidden contamination
2 79 October 20, 2022
MAG sequences used in MetaPhlAn 4 data base
1 49 October 20, 2022
MetaPhlAn 4 for paired end reads of multiple samples
1 56 October 18, 2022
MetaPhlAn file formats across versions
2 37 October 17, 2022