MetaPhlAn

Topic	Replies	Views	Activity
Announcing MetaPhlAn 3.1 MetaPhlAn 3.1 / HUMAnN 3.1 Release Notes MetaPhlAn 3.1 and HUMAnN 3.1 represent a moderate update to the bioBakery 3 software and databases. This update is based on improvements in our ability to align NCBI-sourced micr…	2	63	August 4, 2022
Metaphlan3.1 database download fails	1	14	August 12, 2022
Clear guidance needed for comparing across samples with varying sequencing depth	1	35	August 10, 2022
Gzip fastq as input	2	31	August 10, 2022
Metaphlan target microbiomes	3	40	August 8, 2022
Validating with Critical Assessment of Metagenome Interpretation (CAMI) challenge datasets	5	25	August 6, 2022
Biobakery_workflows reference genomes	3	35	August 3, 2022
metaphlan 4 beta KeyError: 't'	1	31	July 28, 2022
Constructing custom database de novo	2	50	July 22, 2022
Discrepancies between marker database and BLAST	5	35	July 20, 2022
Request for guidance in tracking sequences analyzed by MetaPhlan2.0	1	31	July 18, 2022
List of viruses included when --add_viruses is used	1	40	July 18, 2022
Origin clade specific marker genes	1	41	July 18, 2022
Produce species table which combines results of Metaphlan3 and MAGs whose taxonomy was defined using Phylophlan	1	24	July 18, 2022
Bowtie2 error; list index out of range	3	177	July 18, 2022
Questions about hclust2 output	3	358	July 18, 2022
Building a custom marker genes DB for running Metaphlan	1	42	July 18, 2022
Eukaryotic introns, gene mapping, RNA-Seq	0	19	July 12, 2022
Metaphlan3 keeps giving an UNKNOWN 100 output	12	93	July 7, 2022
Checking for available genomes in MetaPhlAn Database	5	65	July 5, 2022
Long reads (nanopore)	4	30	June 29, 2022
MetaPhlAn bioconda recipe missing metaphlan2krona.py?	0	27	June 28, 2022
Metaphlan 3 runs, but does not produce output files	8	68	June 21, 2022
Does chocophlan database has rna virus marker genes too?	0	32	June 17, 2022
Metaphlan single file processing error	2	29	June 17, 2022
Visualisation with krona	9	743	June 15, 2022
"biobakery_workflows wmgx_vis" grouping	1	16	June 15, 2022
Non-Microbial profiling	7	149	June 15, 2022
Metaphlan3 classification - comparison of samples and RiboDetector	2	41	June 9, 2022
Analysis says 100% unknown?	1	62	June 7, 2022

Announcing MetaPhlAn 3.1

MetaPhlAn 3.1 / HUMAnN 3.1 Release Notes MetaPhlAn 3.1 and HUMAnN 3.1 represent a moderate update to the bioBakery 3 software and databases. This update is based on improvements in our ability to align NCBI-sourced micr…