Microbial community profiling MetaPhlAn
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Announcing MetaPhlAn 4.1 release (new virome database and SGB database update)
MetaPhlAn 4.1 release (new virome database and SGB database update) Announcement: We are pleased to share that MetaPhlAn 4.1 is now available, which includes a new module for viral profiling as described in this bioRxiv … |
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6 | 702 | April 22, 2024 |
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Announcing MetaPhlAn 4
MetaPhlAn 4 Release Notes The new MetaPhlAn 4 integrates information from both metagenome assemblies and microbial isolate genomes for improved and more comprehensive metagenomic taxonomic profiling (https://doi.org/10.… |
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7 | 3761 | June 8, 2023 |
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Announcing MetaPhlAn 3.1
MetaPhlAn 3.1 / HUMAnN 3.1 Release Notes MetaPhlAn 3.1 and HUMAnN 3.1 represent a moderate update to the bioBakery 3 software and databases. This update is based on improvements in our ability to align NCBI-sourced micr… |
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2 | 878 | August 4, 2022 |
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Meaning of 'Processed Reads' in Metaphlan4
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0 | 4 | April 25, 2024 |
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Further explanation needed re oct22_fix_tax.tsv
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0 | 7 | April 25, 2024 |
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Can I download newest mpa_latest file manually?
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0 | 6 | April 25, 2024 |
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Merged virus file abundance--is it really abundance or something else?
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0 | 48 | April 18, 2024 |
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Metaphlan heatmap
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1 | 40 | April 16, 2024 |
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Phylogenetic tree construction
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2 | 267 | April 15, 2024 |
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Metaphlan 4 database during humann3 run
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1 | 75 | April 11, 2024 |
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Building a MetaPhlAn database from fasta sequences
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1 | 659 | March 13, 2023 |
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Ancient DNA microorganisms
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0 | 30 | April 9, 2024 |
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Cannot reproduce results of MetaPhlAn 4.0 tutorial
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4 | 463 | September 1, 2023 |
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Retrieve FASTA files for SGB genomes
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0 | 43 | April 1, 2024 |
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Merge_metaphlan_tables.py doesn't work after converting to GTDB taxonomy
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11 | 807 | March 30, 2024 |
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Unable to merge virus profile.txt files into table
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1 | 86 | March 26, 2024 |
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Metaphlan with -t marker counts, not producing counts
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2 | 68 | March 26, 2024 |
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Unable to use MetaPhlAn-4 database
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5 | 1219 | March 25, 2024 |
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Problem with metaphlan2krona.py
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7 | 651 | March 20, 2024 |
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Merge_metaphlan_tables.py error after fix_relab_mpa4.py
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0 | 52 | March 19, 2024 |
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Merged abundance table to biom format
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11 | 3383 | March 18, 2024 |
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Metaphlan 4 parameters for Mouse Gut
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2 | 192 | March 18, 2024 |
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Differentiating between "kSGBs" and "uSGBs" in MetaPhlAn 4
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1 | 92 | March 11, 2024 |
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List of Taxonomy IDs in Metaphlan database
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1 | 77 | March 11, 2024 |
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Find other samples with a same Species
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3 | 71 | March 11, 2024 |
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Relative abundances not summing to 100
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3 | 141 | March 11, 2024 |
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Question about calculate_diversity.R
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4 | 519 | March 8, 2024 |
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MetaPhlAn4 overestimates the abundance of Veillonella rogosae
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2 | 221 | March 7, 2024 |
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Converting MetaPhlAn3 profiles to GTDB
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1 | 179 | March 6, 2024 |
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I am not getting viruses abundance in MetaPhlAn4.1 using mpa_vJun23 database
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1 | 91 | March 5, 2024 |