Hi,
I have a question about this part:
Same SGBs as for the vJun23_202307 and vOct22_202212 versions, respectively, but the NCBI taxonomy assignment has been fixed to keep the taxa consistent across the MetaPhlAn taxonomic tree, allowing accurate relative abundance estimation also at higher taxonomic levels.
I had used metaphlan4.1 and the vJun23_202307 version of the database originally. Then I used the fixing script to fix relative abundance profiles of my results. It fixed some taxonomy assignments and relative abundance values. Is there a script to make that consistent for count data as well?
I was also wondering if #mpa_vJun23_CHOCOPhlAnSGB_202403 and metaphlan4.1.1 and humann3.9 are compatible.
Thanks,