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Discrepancy Between Input Reads and Estimated Read Counts in MetaPhlAn 4
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3
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72
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July 10, 2025
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MetaPhlAn Analysis and Database Customization for Soil Samples
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0
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44
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July 8, 2025
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SGB Newick file labels
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1
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34
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July 2, 2025
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Question about the unclassified estiamtion
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1
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56
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July 2, 2025
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Question about reproducing a previous metaphlan3 run
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3
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12
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July 2, 2025
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Metaphlan: error: unrecognized arguments: --bowtie2db
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1
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91
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July 2, 2025
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Metaphlan database has duplicate entries, causing downstream failures
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1
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23
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July 1, 2025
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Metaphlan no taxa
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2
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50
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June 16, 2025
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MetaPhlAn Databases
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1
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74
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June 13, 2025
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MetaPhlan4 drastically underestimate the abundance of Bacillus_subtilis|t__SGB7788
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6
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540
|
June 10, 2025
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Metaphlan: sgb_to_gtdb_profile.py fails with KeyError
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1
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64
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June 10, 2025
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Metaphlan3 relative abundance
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14
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7158
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June 9, 2025
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Error in merge_metaphlan_tables.py
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1
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41
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May 19, 2025
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MetaPhlAn did not detect any taxa in the tutorial sample
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0
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49
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April 28, 2025
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Metaphlan4 Unknown taxa 70%
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0
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80
|
April 2, 2025
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Criteria of newick file in MetaPhlAn github
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0
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27
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April 1, 2025
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Scientific names not found in NCBI Taxonomy Browser
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3
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482
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March 31, 2025
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Announcing MetaPhlAn 4.1.1 release
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6
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1042
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June 5, 2025
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MetaPhlAn 4.x Support for Long Reads?
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1
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110
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March 27, 2025
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Unable to replicate results from Metaphlan 4 tutorial
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0
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29
|
March 19, 2025
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MetaPhlan parameters for metatranscriptomics data
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0
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31
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March 6, 2025
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Duplicate Species Entries with and without SGB Annotation
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0
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37
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February 22, 2025
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Database issues with humann3 and metaphlan
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1
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79
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February 13, 2025
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Plot_tree_graphlan
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0
|
20
|
February 15, 2025
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HUMAnN3: single-end reads equal to 50 bp, resulting in zero species
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0
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20
|
February 11, 2025
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Marker genes are protein-coding?
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0
|
21
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February 5, 2025
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Update for sgb to GTDB Translation File - r220
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4
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156
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February 3, 2025
|
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How to use metaphlan output
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1
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100
|
February 2, 2025
|
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MetaPhlan 4 can not found BowTie2 database
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3
|
776
|
January 22, 2025
|
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Possible to get combined profile output instead of R1 and R2 profiles?
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2
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42
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January 17, 2025
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