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Discrepancy between estimated_number_of_reads_from_the_clade and the relative_abundance
|
|
0
|
36
|
January 20, 2026
|
|
SGB identifiers in different versions of Metaphlan database
|
|
0
|
79
|
December 22, 2025
|
|
Sgb_to_gtdb_profile.py keep read count estimation from -t rel_ab_w_read_stats
|
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9
|
540
|
December 12, 2025
|
|
Very-sensitive-local preset and unclassified reads in non-human gut samples
|
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0
|
48
|
December 11, 2025
|
|
Unable to merge virus profile.txt files into table
|
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3
|
244
|
November 27, 2025
|
|
Euks in bt2 index but not in .fna?
|
|
0
|
25
|
November 24, 2025
|
|
Minimap2 Database Files for MetaPhlAn 4.2.2
|
|
7
|
218
|
November 20, 2025
|
|
RA fixing of vJun23_202307 DB
|
|
0
|
64
|
November 7, 2025
|
|
Metaphlan Results Interpretation
|
|
2
|
107
|
November 5, 2025
|
|
Presence of fungi in ChocoPhlAn vJan25
|
|
1
|
115
|
October 30, 2025
|
|
Metaphlan --install deletes minimap fasta
|
|
2
|
142
|
October 29, 2025
|
|
Allowing bowtie2 memory mapping in metaphlan
|
|
3
|
583
|
October 28, 2025
|
|
Connecting SGB ID with fasta of a MAG/genome?
|
|
0
|
87
|
October 28, 2025
|
|
Rarecurve on long read from Metaphlan 4.2.2
|
|
3
|
102
|
October 27, 2025
|
|
Best practices for visualizing MetaPhlAn 4 MAG identifiers (SGB, FGB, etc.)?
|
|
1
|
104
|
October 27, 2025
|
|
MetaPhlan doesn't detect any microbial samples
|
|
2
|
79
|
October 27, 2025
|
|
ERROR: The Viral Sequence Clusters mode with fasta files requires to specify a SAM output file
|
|
1
|
30
|
October 27, 2025
|
|
Metaphlan: sgb_to_gtdb_profile.py fails with KeyError
|
|
3
|
143
|
October 27, 2025
|
|
Error running fasta files Metaphlan4.2.3
|
|
3
|
88
|
October 21, 2025
|
|
About duplicate reads
|
|
3
|
439
|
October 21, 2025
|
|
MetaPhlAn Input for paired end sequences previously filtered?
|
|
2
|
72
|
October 20, 2025
|
|
MetaPhlAn v4.2.3 installation errors
|
|
2
|
104
|
October 20, 2025
|
|
Error encountered when using hclust2.py in the conda-created metaphlan4.2.2 environment on Ubuntu 22 terminal
|
|
0
|
52
|
October 15, 2025
|
|
How to Identify Species Names, Potential Functions, and Obtain Sequences for Unnamed Taxa (e.g., s__GGB4550_SGB6273) in Metaphlan 4.2.2 Species Abundance Tables?
|
|
0
|
41
|
October 15, 2025
|
|
Extract "Unclassified" sequences
|
|
1
|
66
|
October 14, 2025
|
|
Inquiry on sgb_to_gtdb_profile database
|
|
1
|
68
|
September 29, 2025
|
|
How to deal with GGB and SGB species?
|
|
7
|
485
|
September 25, 2025
|
|
Make custom metaphlan database by adding some more genomes
|
|
0
|
73
|
September 23, 2025
|
|
Prevotella copri clades in MetaPhlAn 4 results
|
|
5
|
87
|
September 22, 2025
|
|
MetaPhlAn unrecognized argument --bowtie2out
|
|
11
|
647
|
September 22, 2025
|