|
MetaPhlAn 4.1 virome module not identifying known viruses
|
|
1
|
128
|
November 15, 2024
|
|
Recommended align two fastq files that have different amount of reads
|
|
1
|
25
|
November 8, 2024
|
|
Running MetaPhlAn4.1 to detect both virus and bacteria
|
|
1
|
68
|
November 8, 2024
|
|
Virus detection with metaphlan 4.1
|
|
3
|
168
|
November 8, 2024
|
|
Issue with running StrainPhlAn 4.1 - Error in running ample2markers.py
|
|
2
|
164
|
October 24, 2024
|
|
Strain-Level Abundance using MetaPhlAn4 or StrainPhlAn
|
|
0
|
46
|
October 4, 2024
|
|
Nreads of bowtie2 file
|
|
5
|
295
|
October 1, 2024
|
|
Can we add a column with the number of reads for each taxon next to relative_abundance?
|
|
6
|
419
|
September 26, 2024
|
|
Constructing phylogenetic tree
|
|
7
|
621
|
September 25, 2024
|
|
Metaphlan unclassified output
|
|
2
|
105
|
September 25, 2024
|
|
Deviation in Standard Reference Annotation Results of Metaphlan4
|
|
1
|
32
|
September 24, 2024
|
|
Bacteroidota or bacteroidetes
|
|
4
|
59
|
September 24, 2024
|
|
MetaPhlAn 4.0 is missing the list of marker genes
|
|
1
|
39
|
September 24, 2024
|
|
Strain-Level Abundance: MetaPhlAn2 vs. Newer Versions?
|
|
0
|
39
|
September 23, 2024
|
|
Unable to download MetaPhlAn 4 database
|
|
0
|
263
|
April 2, 2024
|
|
Shared taxonomy ID by multiple species in Segatella
|
|
0
|
34
|
September 5, 2024
|
|
Metaphlan4 calculate_diversity.R error
|
|
7
|
1232
|
August 29, 2024
|
|
MetaPhlAn viral module
|
|
0
|
65
|
August 22, 2024
|
|
Metaphlan4 Classification Error
|
|
0
|
47
|
August 14, 2024
|
|
WARNING: MetaPhlAn did not detect any microbial taxa in the sample
|
|
2
|
138
|
August 12, 2024
|
|
Announcing MetaPhlAn 4.1 release (new virome database and SGB database update)
|
|
10
|
2166
|
May 27, 2024
|
|
Percentage of classification
|
|
0
|
34
|
July 31, 2024
|
|
Auto-updating database seems to break MetaPhlAn4
|
|
4
|
231
|
July 17, 2024
|
|
Question about calculate_diversity.R
|
|
5
|
721
|
July 16, 2024
|
|
Metaphlan4_database problem
|
|
0
|
71
|
July 15, 2024
|
|
HUMann2 and MetaPhlAn2
|
|
0
|
30
|
July 13, 2024
|
|
(ERR): bowtie2-align died with signal 7 (BUS) (core dumped)[Errno 32] Broken pipe
|
|
0
|
47
|
July 12, 2024
|
|
Metaphlan 3.0 manual db download problem
|
|
0
|
38
|
July 12, 2024
|
|
Type Error: unsupported operand type(s) for +: 'int' and 'str'
|
|
0
|
22
|
July 4, 2024
|
|
Inquiry regarding MetaPhlAn SGBs phylogenetic tree
|
|
18
|
1420
|
July 4, 2024
|