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Reverse forward reads as input in MetaPhlAn 4
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2
|
58
|
February 17, 2026
|
|
Extending the metaphlan4 database (Jan2025) to include subspecies
|
|
2
|
90
|
February 13, 2026
|
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Metaphlan flags and parameters for extreme metagenomes
|
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1
|
28
|
January 30, 2026
|
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Discrepancy between estimated_number_of_reads_from_the_clade and the relative_abundance
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0
|
38
|
January 20, 2026
|
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SGB identifiers in different versions of Metaphlan database
|
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0
|
80
|
December 22, 2025
|
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Sgb_to_gtdb_profile.py keep read count estimation from -t rel_ab_w_read_stats
|
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9
|
549
|
December 12, 2025
|
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Very-sensitive-local preset and unclassified reads in non-human gut samples
|
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0
|
58
|
December 11, 2025
|
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Unable to merge virus profile.txt files into table
|
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3
|
246
|
November 27, 2025
|
|
Euks in bt2 index but not in .fna?
|
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0
|
26
|
November 24, 2025
|
|
Minimap2 Database Files for MetaPhlAn 4.2.2
|
|
7
|
225
|
November 20, 2025
|
|
RA fixing of vJun23_202307 DB
|
|
0
|
67
|
November 7, 2025
|
|
Metaphlan Results Interpretation
|
|
2
|
115
|
November 5, 2025
|
|
Presence of fungi in ChocoPhlAn vJan25
|
|
1
|
143
|
October 30, 2025
|
|
Metaphlan --install deletes minimap fasta
|
|
2
|
152
|
October 29, 2025
|
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Allowing bowtie2 memory mapping in metaphlan
|
|
3
|
597
|
October 28, 2025
|
|
Connecting SGB ID with fasta of a MAG/genome?
|
|
0
|
89
|
October 28, 2025
|
|
Rarecurve on long read from Metaphlan 4.2.2
|
|
3
|
107
|
October 27, 2025
|
|
Best practices for visualizing MetaPhlAn 4 MAG identifiers (SGB, FGB, etc.)?
|
|
1
|
110
|
October 27, 2025
|
|
MetaPhlan doesn't detect any microbial samples
|
|
2
|
84
|
October 27, 2025
|
|
ERROR: The Viral Sequence Clusters mode with fasta files requires to specify a SAM output file
|
|
1
|
30
|
October 27, 2025
|
|
Metaphlan: sgb_to_gtdb_profile.py fails with KeyError
|
|
3
|
153
|
October 27, 2025
|
|
Error running fasta files Metaphlan4.2.3
|
|
3
|
89
|
October 21, 2025
|
|
About duplicate reads
|
|
3
|
450
|
October 21, 2025
|
|
MetaPhlAn Input for paired end sequences previously filtered?
|
|
2
|
79
|
October 20, 2025
|
|
MetaPhlAn v4.2.3 installation errors
|
|
2
|
108
|
October 20, 2025
|
|
Error encountered when using hclust2.py in the conda-created metaphlan4.2.2 environment on Ubuntu 22 terminal
|
|
0
|
52
|
October 15, 2025
|
|
How to Identify Species Names, Potential Functions, and Obtain Sequences for Unnamed Taxa (e.g., s__GGB4550_SGB6273) in Metaphlan 4.2.2 Species Abundance Tables?
|
|
0
|
43
|
October 15, 2025
|
|
Extract "Unclassified" sequences
|
|
1
|
77
|
October 14, 2025
|
|
Inquiry on sgb_to_gtdb_profile database
|
|
1
|
76
|
September 29, 2025
|
|
How to deal with GGB and SGB species?
|
|
7
|
527
|
September 25, 2025
|