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Metaphlan: error: unrecognized arguments: --bowtie2db
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1
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139
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July 2, 2025
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Metaphlan database has duplicate entries, causing downstream failures
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1
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29
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July 1, 2025
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Metaphlan no taxa
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2
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61
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June 16, 2025
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MetaPhlAn Databases
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1
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111
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June 13, 2025
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MetaPhlan4 drastically underestimate the abundance of Bacillus_subtilis|t__SGB7788
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6
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582
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June 10, 2025
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Metaphlan3 relative abundance
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14
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7315
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June 9, 2025
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Error in merge_metaphlan_tables.py
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1
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53
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May 19, 2025
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MetaPhlAn did not detect any taxa in the tutorial sample
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0
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61
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April 28, 2025
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Metaphlan4 Unknown taxa 70%
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0
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92
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April 2, 2025
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Criteria of newick file in MetaPhlAn github
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0
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45
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April 1, 2025
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Scientific names not found in NCBI Taxonomy Browser
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3
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519
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March 31, 2025
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Announcing MetaPhlAn 4.1.1 release
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6
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1134
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June 5, 2025
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MetaPhlAn 4.x Support for Long Reads?
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1
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167
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March 27, 2025
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Unable to replicate results from Metaphlan 4 tutorial
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0
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31
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March 19, 2025
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MetaPhlan parameters for metatranscriptomics data
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0
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51
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March 6, 2025
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Duplicate Species Entries with and without SGB Annotation
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0
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42
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February 22, 2025
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Database issues with humann3 and metaphlan
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1
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88
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February 13, 2025
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Plot_tree_graphlan
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0
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25
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February 15, 2025
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HUMAnN3: single-end reads equal to 50 bp, resulting in zero species
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0
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23
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February 11, 2025
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Marker genes are protein-coding?
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0
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25
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February 5, 2025
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Update for sgb to GTDB Translation File - r220
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4
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201
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February 3, 2025
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How to use metaphlan output
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1
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116
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February 2, 2025
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MetaPhlan 4 can not found BowTie2 database
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3
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801
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January 22, 2025
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Possible to get combined profile output instead of R1 and R2 profiles?
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2
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55
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January 17, 2025
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cFMD dataset in ChocoPhlAn
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1
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37
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January 17, 2025
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Kluyveromyces marxianus is not found in MetaPhlan4 database
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2
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51
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January 15, 2025
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MetaPhlAn4 database missing Citrobacter species?
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0
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41
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January 14, 2025
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Zero handling for CLR-transformation of relative abundance from MetaPhlAn
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0
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84
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January 3, 2025
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calculate_diversity.R Issues
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3
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82
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December 16, 2024
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Profile VSC without profiling Bacteria?
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1
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63
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December 12, 2024
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