|
Absolute abundance from Metaphlan4
|
|
0
|
81
|
September 18, 2025
|
|
MetaPhlAn 4.2.2 --profile_vsc
|
|
4
|
131
|
September 12, 2025
|
|
Metaphlan database problem
|
|
3
|
283
|
September 11, 2025
|
|
When parallel runs metaphlan 4 in parallel, the database is occupied.
|
|
1
|
28
|
September 11, 2025
|
|
MetaPhlAn 4.1.0: SAM not generated when using --samout with --input_type bowtie2out
|
|
1
|
51
|
September 11, 2025
|
|
How to input dual-end data in Metaphlan
|
|
1
|
72
|
September 11, 2025
|
|
[Errno 21] Is a directory" during .nwk download & "database partially present" warning
|
|
1
|
78
|
September 11, 2025
|
|
When using MetaPhlAn 4.2.2 for species annotation,Ubuntu automatically crashes.
|
|
1
|
38
|
September 11, 2025
|
|
Long read minimap2 error
|
|
1
|
42
|
September 11, 2025
|
|
Some questions about annotations
|
|
1
|
41
|
September 10, 2025
|
|
Make downloads available in https
|
|
0
|
45
|
January 10, 2025
|
|
MetaPhlAn database download stalls at 16.57%
|
|
2
|
99
|
August 21, 2025
|
|
Finding a specific older database species in newer database
|
|
0
|
38
|
August 20, 2025
|
|
Coverage Data from MetaPhlAn 4.1
|
|
1
|
85
|
August 5, 2025
|
|
Custom Database Fails Due to Missing ViralDB Files (*_VSG.fna, *_VINFO.csv)
|
|
0
|
59
|
August 1, 2025
|
|
Can we add a column with the number of reads for each taxon next to relative_abundance?
|
|
7
|
595
|
July 25, 2025
|
|
Calculate alpha diversity before or after filtering?
|
|
1
|
151
|
July 17, 2025
|
|
Metaphlan4 misclassification
|
|
2
|
47
|
July 17, 2025
|
|
Discrepancy Between Input Reads and Estimated Read Counts in MetaPhlAn 4
|
|
3
|
149
|
July 10, 2025
|
|
MetaPhlAn Analysis and Database Customization for Soil Samples
|
|
0
|
77
|
July 8, 2025
|
|
Question about the unclassified estiamtion
|
|
1
|
126
|
July 2, 2025
|
|
Question about reproducing a previous metaphlan3 run
|
|
3
|
37
|
July 2, 2025
|
|
Metaphlan: error: unrecognized arguments: --bowtie2db
|
|
1
|
188
|
July 2, 2025
|
|
Metaphlan database has duplicate entries, causing downstream failures
|
|
1
|
38
|
July 1, 2025
|
|
Metaphlan no taxa
|
|
2
|
74
|
June 16, 2025
|
|
MetaPhlAn Databases
|
|
1
|
151
|
June 13, 2025
|
|
MetaPhlan4 drastically underestimate the abundance of Bacillus_subtilis|t__SGB7788
|
|
6
|
610
|
June 10, 2025
|
|
Metaphlan3 relative abundance
|
|
14
|
7490
|
June 9, 2025
|
|
Error in merge_metaphlan_tables.py
|
|
1
|
58
|
May 19, 2025
|
|
MetaPhlAn did not detect any taxa in the tutorial sample
|
|
0
|
65
|
April 28, 2025
|