Hi all, Can you please suggest a method to download all the SGB genomes used to construct the metaphlan4 database? If I understand correctly, the links on the Segata Lab website (Segata Lab - Computational Metagenomics) only contain a subset of the SGB genomes used, but not all of them.
I was considering using the dataset download tool available on NCBI to download the genomes via accession ids (provided in the supplementary table) but is there an easier/faster way? Thanks.
Hi @anashank97
Unfortunately, we do not have available all the sequences of the MAGs used to build the metaphlan4 database. The only MAGs and references available are those from the original SGB publication you linked but we are still working on a platform to make all the MAGs publicly available.