|
About the Kneaddata category
|
|
0
|
318
|
October 28, 2019
|
|
Kneaddata output
|
|
4
|
127
|
May 13, 2022
|
|
Dealing with paired-end shotgun metagenomics sequencing ran on two lanes
|
|
0
|
7
|
May 13, 2022
|
|
Kneaddata in shell script
|
|
0
|
8
|
May 9, 2022
|
|
Kneaddata adds "#0/1" to barcode in the header
|
|
0
|
10
|
May 4, 2022
|
|
Version information of KneadData
|
|
0
|
17
|
April 20, 2022
|
|
No reads in the "Final output files created"
|
|
2
|
46
|
April 14, 2022
|
|
Problem with paired end demo on new install
|
|
11
|
1100
|
April 9, 2022
|
|
Custom database with multiple species
|
|
2
|
62
|
March 31, 2022
|
|
About TRF in kneaddata
|
|
3
|
99
|
March 31, 2022
|
|
Kneaddata MINLEN behaviour unexpected; Adapters remain unremoved
|
|
0
|
23
|
March 30, 2022
|
|
Bowtie2 mode for Host decontamination of metagenomic samples using proxy species
|
|
0
|
26
|
March 23, 2022
|
|
Kneaddata - a non very explicit error message
|
|
0
|
44
|
March 21, 2022
|
|
There are less reads survived after kneaddata
|
|
3
|
167
|
March 18, 2022
|
|
Kneaddata removed rRNA reads accounting
|
|
2
|
57
|
March 11, 2022
|
|
KneadData critical error in bowtie2_discordant_pairs
|
|
3
|
251
|
March 2, 2022
|
|
Choosing trim minimum length : would you share advice?
|
|
0
|
41
|
February 28, 2022
|
|
Discard read by minimum length
|
|
2
|
194
|
February 28, 2022
|
|
All paired-end read unmatched
|
|
3
|
199
|
February 28, 2022
|
|
--sequencer-source option
|
|
0
|
40
|
February 2, 2022
|
|
KneadData --processes option
|
|
0
|
45
|
January 31, 2022
|
|
Parallelized data compression `lbzip2` and `pigz`
|
|
0
|
42
|
January 27, 2022
|
|
Environmental sample-Kneaddata
|
|
0
|
46
|
January 21, 2022
|
|
Kneaddata trim options, file headers, and consistent options flags
|
|
0
|
76
|
January 13, 2022
|
|
Paired end data showing error on --bypass-trim option
|
|
7
|
180
|
January 8, 2022
|
|
`pip install kneaddata` doesn't install dependencies
|
|
0
|
55
|
January 3, 2022
|
|
ERROR: Unable to find trf
|
|
2
|
1075
|
January 5, 2022
|
|
Kneaddata Reformatting file sequence identifiers ... Type error
|
|
2
|
200
|
January 3, 2022
|
|
Interpreting file names and sizes
|
|
0
|
71
|
December 17, 2021
|
|
What happends with bowtie?
|
|
1
|
247
|
December 14, 2021
|