|
Kneaddata tossing roughly half of the reads at the trimmomatic step
|
|
0
|
30
|
August 29, 2024
|
|
Kneaddata unable to interpret sequencing header format
|
|
4
|
93
|
August 23, 2024
|
|
Paired End Run output explanation
|
|
1
|
68
|
August 22, 2024
|
|
Bowtie2 removed the entire reads from my fecal metagenomic data
|
|
2
|
107
|
August 10, 2024
|
|
Trimmomatic errors
|
|
2
|
106
|
August 2, 2024
|
|
Processes and threads command difference in Kneaddata
|
|
0
|
62
|
July 1, 2024
|
|
Paired input to kneaddata resulting in unpaired files
|
|
1
|
397
|
June 29, 2024
|
|
Paired-end data results in unpaired output
|
|
27
|
6055
|
June 20, 2024
|
|
Combined MTX/MGX analysis, contamination removal
|
|
0
|
70
|
May 28, 2024
|
|
Limit input file size when running kneaddata
|
|
0
|
71
|
May 20, 2024
|
|
Bug for TRF Download
|
|
1
|
170
|
May 8, 2024
|
|
KneadData critical error in bowtie2_discordant_pairs
|
|
12
|
1901
|
April 17, 2024
|
|
Kneaddata stringent bowtie2 filtering
|
|
0
|
143
|
April 3, 2024
|
|
`pip install kneaddata` doesn't install dependencies
|
|
2
|
598
|
April 2, 2024
|
|
Error with bowtie2: Saw ASCII character 10 but expected 33-based Phred qual
|
|
0
|
174
|
March 29, 2024
|
|
ERROR kneaddata output files
|
|
0
|
182
|
February 12, 2024
|
|
"Clarification on Trimommatic Default Parameters in Kneaddata: Understanding MINLEN Checks for 2x150 bp Data"
|
|
0
|
207
|
January 26, 2024
|
|
Find TRF version within KneadData
|
|
1
|
170
|
January 19, 2024
|
|
Error when using kneaddata from anaconda
|
|
2
|
377
|
January 2, 2024
|
|
ERROR: Unable to find trf
|
|
5
|
3437
|
December 26, 2023
|
|
About memory usage of Kneaddata
|
|
0
|
166
|
December 22, 2023
|
|
Kneaddata databases download issue
|
|
3
|
222
|
December 22, 2023
|
|
TRF: Total number of sequences with repeats removed from file
|
|
0
|
215
|
October 24, 2023
|
|
Single-end or Paired-end?
|
|
0
|
342
|
October 20, 2023
|
|
Updated kneaddata to fix issue with paired-end reads?
|
|
9
|
1580
|
October 12, 2023
|
|
Kneaddata trf error
|
|
6
|
1577
|
September 25, 2023
|
|
Kneaddata fail to recognize paired end data
|
|
2
|
406
|
August 30, 2023
|
|
Kneaddata_database hangs halfway through download
|
|
2
|
376
|
August 25, 2023
|
|
Kneaddata final pair1 : Total reads after merging results from multiple databases
|
|
0
|
271
|
August 22, 2023
|
|
Error in trimmomatic while running kneaddata
|
|
3
|
642
|
August 17, 2023
|