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What to do with unmatched paired-end reads from kneadata outputs?
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1
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471
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August 3, 2023
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Error in kneaddata
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6
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802
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August 3, 2023
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Kneaddata upaires reads
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5
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535
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July 18, 2023
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Feature request for kneaddata: add option to compress output fastq files
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5
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569
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July 10, 2023
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Different final reads after pre-processing with same code running twice
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0
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232
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July 7, 2023
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Error occurred during initialization of VM: Trimmomatic
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1
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361
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July 7, 2023
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How to continue to download database from where it was disrupted
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2
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343
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June 28, 2023
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About TRF in kneaddata
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6
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1523
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June 1, 2023
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Lost majority of the reads after kneadata
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1
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737
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May 24, 2023
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Install KneadData in conda w/o Bowtie and Trimmomatic
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0
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420
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May 11, 2023
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Long ugly file names of output files by Kneaddata
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7
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738
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April 1, 2023
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Kneaddata- any options to checkpoint the runs and resume the runs
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3
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412
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March 17, 2023
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KneadData has error in bowtie2_discordant_pairs
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0
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682
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March 11, 2023
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Keaddata output is empty
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0
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373
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March 3, 2023
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Processing multiple files
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3
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737
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March 2, 2023
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Paired end data showing error on --bypass-trim option
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12
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1449
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February 28, 2023
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Save SAM outputs files
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0
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381
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February 20, 2023
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Interpreting read_count_table Numbers?
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0
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352
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February 9, 2023
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Questions about the read count table pulled from kneaddata logs
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1
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571
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February 8, 2023
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There are less reads survived after kneaddata
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5
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1133
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January 23, 2023
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Total reads after trimming is the SAME as Initial number of reads
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0
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284
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January 5, 2023
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[wmgx workflow] Discrepancy in total read counts between kneaddata and humann
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3
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466
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December 15, 2022
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Kneaddata paired reads?
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0
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387
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December 8, 2022
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Issue with KneadData database download
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1
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538
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November 29, 2022
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Kneaddata errors and output files
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1
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658
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November 20, 2022
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Metaphlan error after processing fastq using kneaddata v0.12.0
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0
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893
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November 15, 2022
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Custom database with multiple species
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3
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951
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November 4, 2022
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How can I expand the max amount of memory at running trimmomatic?
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1
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472
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October 29, 2022
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Choosing trim minimum length : would you share advice?
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2
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1188
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October 22, 2022
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MINLEN question
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12
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2850
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October 21, 2022
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