|
Kneaddata fail to recognize paired end data
|
|
2
|
425
|
August 30, 2023
|
|
Kneaddata_database hangs halfway through download
|
|
2
|
399
|
August 25, 2023
|
|
Kneaddata final pair1 : Total reads after merging results from multiple databases
|
|
0
|
280
|
August 22, 2023
|
|
Error in trimmomatic while running kneaddata
|
|
3
|
667
|
August 17, 2023
|
|
Error when using --bypass-trim
|
|
0
|
397
|
August 11, 2023
|
|
What to do with unmatched paired-end reads from kneadata outputs?
|
|
1
|
521
|
August 3, 2023
|
|
Error in kneaddata
|
|
6
|
895
|
August 3, 2023
|
|
Kneaddata upaires reads
|
|
5
|
566
|
July 18, 2023
|
|
Feature request for kneaddata: add option to compress output fastq files
|
|
5
|
615
|
July 10, 2023
|
|
Different final reads after pre-processing with same code running twice
|
|
0
|
249
|
July 7, 2023
|
|
Error occurred during initialization of VM: Trimmomatic
|
|
1
|
432
|
July 7, 2023
|
|
How to continue to download database from where it was disrupted
|
|
2
|
362
|
June 28, 2023
|
|
About TRF in kneaddata
|
|
6
|
1613
|
June 1, 2023
|
|
Lost majority of the reads after kneadata
|
|
1
|
772
|
May 24, 2023
|
|
Install KneadData in conda w/o Bowtie and Trimmomatic
|
|
0
|
442
|
May 11, 2023
|
|
Long ugly file names of output files by Kneaddata
|
|
7
|
801
|
April 1, 2023
|
|
Kneaddata- any options to checkpoint the runs and resume the runs
|
|
3
|
467
|
March 17, 2023
|
|
KneadData has error in bowtie2_discordant_pairs
|
|
0
|
695
|
March 11, 2023
|
|
Keaddata output is empty
|
|
0
|
385
|
March 3, 2023
|
|
Processing multiple files
|
|
3
|
808
|
March 2, 2023
|
|
Paired end data showing error on --bypass-trim option
|
|
12
|
1521
|
February 28, 2023
|
|
Save SAM outputs files
|
|
0
|
404
|
February 20, 2023
|
|
Interpreting read_count_table Numbers?
|
|
0
|
384
|
February 9, 2023
|
|
Questions about the read count table pulled from kneaddata logs
|
|
1
|
607
|
February 8, 2023
|
|
There are less reads survived after kneaddata
|
|
5
|
1185
|
January 23, 2023
|
|
Total reads after trimming is the SAME as Initial number of reads
|
|
0
|
300
|
January 5, 2023
|
|
[wmgx workflow] Discrepancy in total read counts between kneaddata and humann
|
|
3
|
496
|
December 15, 2022
|
|
Kneaddata paired reads?
|
|
0
|
410
|
December 8, 2022
|
|
Issue with KneadData database download
|
|
1
|
571
|
November 29, 2022
|
|
Kneaddata errors and output files
|
|
1
|
676
|
November 20, 2022
|