Error when using kneaddata from anaconda

Infrastructure and utilities KneadData
1

kneaddata v0.12.0

When installing kneaddata from anaconda there are two errors that occur when using it:

  • trimmomatic in anaconda is a python wrapper script, so it gives the next error: Error: Invalid or corrupt jarfile /A2/danielpalma/mambaforge/envs/kneaddata/bin/trimmomatic
  • It doesn’t remove adapters, since the default parameters for trimmomatic when using kneaddata --help are [ DEFAULT : MINLEN:60 ILLUMINACLIP:/-SE.fa:2:30:10 SLIDINGWINDOW:4:20 MINLEN:50 ] I think that it is not recognizing correctly the adapters folder