kneaddata v0.12.0
When installing kneaddata from anaconda there are two errors that occur when using it:
- trimmomatic in anaconda is a python wrapper script, so it gives the next error:
Error: Invalid or corrupt jarfile /A2/danielpalma/mambaforge/envs/kneaddata/bin/trimmomatic
- It doesn’t remove adapters, since the default parameters for trimmomatic when using
kneaddata --help
are[ DEFAULT : MINLEN:60 ILLUMINACLIP:/-SE.fa:2:30:10 SLIDINGWINDOW:4:20 MINLEN:50 ]
I think that it is not recognizing correctly the adapters folder