Kneaddata_database --download human_genome bowtie2

Infrastructure and utilities KneadData
1

Dear all, I was try to download human_genome bowtie2 database and it replays with this:

kneaddata_database --download human_genome bowtie2 ./

Download URL: https://huttenhower.sph.harvard.edu/kneadData_databases/Homo_sapiens_hg39_T2D_Bowtie2_v0.1.tar.gz
CRITICAL ERROR: Unable to download and extract from URL: https://huttenhower.sph.harvard.edu/kneadData_databases/Homo_sapiens_hg39_T2D_Bowtie2_v0.1.tar.gz

In the database page there is a very much similar database: Homo_sapiens_hg39_T2T_Bowtie2_v0.1.tar.gz

I was just wondering if the two databases are the same and there is a spelling error

kind regards

2

Hi @BlueK77 ,
That is correct. We have fixed the issue in the develop version in the github and will get this released in PyPi and conda asap.

Regards,
Sagun