Hello,
Thanks for these awesome tools.
my code:
sample2markers.py -i /home/ep189/strainer_tutorial/sams/*.sam.bz2 -o /home/ep189/strainer_tutorial/consensus_markers -n 8
the error I got:
Traceback (most recent call last):
File “/home/ep189/.local/bin/sample2markers.py”, line 11, in
load_entry_point(‘MetaPhlAn==3.0.0a1’, ‘console_scripts’, ‘sample2markers.py’)()
File “/usr/lib/python3.6/site-packages/pkg_resources/init.py”, line 476, in load_entry_point
return get_distribution(dist).load_entry_point(group, name)
File “/usr/lib/python3.6/site-packages/pkg_resources/init.py”, line 2700, in load_entry_point
return ep.load()
File “/usr/lib/python3.6/site-packages/pkg_resources/init.py”, line 2318, in load
return self.resolve()
File “/usr/lib/python3.6/site-packages/pkg_resources/init.py”, line 2324, in resolve
module = import(self.module_name, fromlist=[‘name’], level=0)
File “/home/ep189/.local/lib/python3.6/site-packages/metaphlan/utils/sample2markers.py”, line 24, in
from cmseq import cmseq
ModuleNotFoundError: No module named ‘cmseq’
I tried reinstalling cmseq with conda, but no luck. I installed metaphlan 3.0 with conda.
Any other suggestions? Thanks so much.