|
About the StrainPhlAn category
|
|
0
|
373
|
November 12, 2019
|
|
StrainPhlan4: No markers were found for the clade
|
|
3
|
26
|
November 11, 2022
|
|
Visualization with GraPhlAn not generating appropriate plots. Missing nodes and labels
|
|
3
|
46
|
September 30, 2022
|
|
StrainPhlAn - Secondary references and samples
|
|
2
|
70
|
August 25, 2022
|
|
Metadata form for strain_transmission.py -h
|
|
1
|
104
|
August 12, 2022
|
|
BLAST - Local id is too long
|
|
2
|
167
|
August 12, 2022
|
|
Metaphlan output estimated reads mapped to known clades
|
|
1
|
66
|
August 12, 2022
|
|
Biobakery workflow fails all tasks
|
|
3
|
96
|
August 8, 2022
|
|
Metaphlan-Strainphlan discrepancy
|
|
1
|
68
|
July 28, 2022
|
|
Marker gene identification within the multiple sequence alignment from StrainPhlAn
|
|
4
|
150
|
July 22, 2022
|
|
StrainPhlAn execution failed due to too many discarded
|
|
1
|
139
|
July 18, 2022
|
|
Mutation rate calculation
|
|
1
|
74
|
July 18, 2022
|
|
Strainphlan execution failed due to too many discarded samples
|
|
8
|
112
|
July 5, 2022
|
|
No alignments found to concatenate
|
|
5
|
86
|
June 30, 2022
|
|
Where do reference genome marker sequences come from?
|
|
3
|
79
|
June 28, 2022
|
|
StrainPhlan plots questions
|
|
3
|
82
|
June 3, 2022
|
|
Getting strain counts from StrainPhlAn
|
|
4
|
110
|
June 1, 2022
|
|
Phylogeny can not be inferred. No enough markers were kept for the samples
|
|
4
|
100
|
May 31, 2022
|
|
Humann3 intermediate output file (sam) for strainphlan
|
|
4
|
142
|
May 20, 2022
|
|
How to creat sam.bz2 with already run metaphlan with the output of profile.txt and bowtie2 file
|
|
2
|
89
|
April 24, 2022
|
|
Could not add metadata to StrainPhlan output
|
|
1
|
123
|
April 13, 2022
|
|
Deeper issue to "Phylogeny can not be inferred. Too many samples were discarded"
|
|
5
|
188
|
March 7, 2022
|
|
How do I get what strains are present in each sample?
|
|
1
|
126
|
March 7, 2022
|
|
Samtools not recognized by sample2markers.py?
|
|
2
|
135
|
February 22, 2022
|
|
Samtools view trouble reading files
|
|
2
|
276
|
February 11, 2022
|
|
Strainphlan sample2markers.py AttributeError: 'NoneType' object has no attribute 'reference_free_consensus'
|
|
3
|
178
|
August 5, 2021
|
|
Single dominant species in non-gut microbiome
|
|
2
|
115
|
December 11, 2021
|
|
Multiple interrelated species (Streptococci)
|
|
3
|
221
|
November 29, 2021
|
|
Biobakery workflows strainphlan failed due to makeblastdb error
|
|
2
|
214
|
November 19, 2021
|
|
Where can i get metaphlan_databases information？
|
|
1
|
182
|
October 26, 2021
|