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About the StrainPhlAn category
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0
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319
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November 12, 2019
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Metadata form for strain_transmission.py -h
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1
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5
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August 12, 2022
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StrainPhlAn - Secondary references and samples
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1
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8
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August 12, 2022
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BLAST - Local id is too long
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2
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10
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August 12, 2022
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Metaphlan output estimated reads mapped to known clades
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1
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11
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August 12, 2022
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Biobakery workflow fails all tasks
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3
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25
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August 8, 2022
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Metaphlan-Strainphlan discrepancy
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1
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21
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July 28, 2022
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Marker gene identification within the multiple sequence alignment from StrainPhlAn
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4
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110
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July 22, 2022
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StrainPhlAn execution failed due to too many discarded
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1
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34
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July 18, 2022
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Mutation rate calculation
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1
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37
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July 18, 2022
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Strainphlan execution failed due to too many discarded samples
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8
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66
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July 5, 2022
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No alignments found to concatenate
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5
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30
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June 30, 2022
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Where do reference genome marker sequences come from?
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3
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42
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June 28, 2022
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StrainPhlan plots questions
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3
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40
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June 3, 2022
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Getting strain counts from StrainPhlAn
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4
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47
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June 1, 2022
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Phylogeny can not be inferred. No enough markers were kept for the samples
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4
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54
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May 31, 2022
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Humann3 intermediate output file (sam) for strainphlan
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4
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93
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May 20, 2022
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How to creat sam.bz2 with already run metaphlan with the output of profile.txt and bowtie2 file
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2
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46
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April 24, 2022
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Could not add metadata to StrainPhlan output
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1
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62
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April 13, 2022
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Deeper issue to "Phylogeny can not be inferred. Too many samples were discarded"
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5
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134
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March 7, 2022
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How do I get what strains are present in each sample?
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1
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74
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March 7, 2022
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Samtools not recognized by sample2markers.py?
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2
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75
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February 22, 2022
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Samtools view trouble reading files
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2
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95
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February 11, 2022
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Strainphlan sample2markers.py AttributeError: 'NoneType' object has no attribute 'reference_free_consensus'
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3
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146
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August 5, 2021
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Single dominant species in non-gut microbiome
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2
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89
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December 11, 2021
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Multiple interrelated species (Streptococci)
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3
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152
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November 29, 2021
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Biobakery workflows strainphlan failed due to makeblastdb error
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2
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154
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November 19, 2021
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Where can i get metaphlan_databases information？
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1
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147
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October 26, 2021
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Understanding StrainPhlAn for beginners
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3
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284
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September 29, 2021
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Length of concatenated alignment file
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12
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201
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August 31, 2021
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