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About the StrainPhlAn category
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0
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449
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November 12, 2019
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Options to adjust thresholds to work around 'too many samples discarded' issue
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0
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7
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May 25, 2023
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Metaphlan4 and graphlan compatability
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1
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36
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May 9, 2023
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Problem extracting the species marker genes from metaphlan4 database
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1
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36
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May 9, 2023
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A Error occurred by running StrainPhlAn(4.0.6), this error is [Error] Phylogeny can not be inferred. Too many samples were discarded
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5
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120
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May 9, 2023
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Strainphlan Version 4.0.6 Error AttributeError: 'Seq' object has no attribute 'replace'
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2
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86
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May 8, 2023
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Processing samples... error during StrainPhlAn 4 run
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1
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87
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April 20, 2023
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PhyloPhlAn database error during StrainPhlAn 4 run
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10
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155
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April 15, 2023
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Calculating the strain transmission in different body sites?
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1
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49
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April 14, 2023
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Too many samples discarded
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7
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90
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April 5, 2023
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Dealing with "Too many samples were discarded"
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3
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71
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March 30, 2023
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Strainphlan shallow shotgun sequencing data
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1
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105
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March 23, 2023
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Subtrees from StrainPhlAn3
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1
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82
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February 27, 2023
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Polymorphic rate and single dominant strain
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10
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117
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February 24, 2023
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StrainPhlAn output file
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1
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76
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February 21, 2023
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AttributeError: 'Seq' object has no attribute 'replace'
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4
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210
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February 17, 2023
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StrainPhlan clade "s__Akkermansia_muciniphila" not accepted and should provide in SGB format
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1
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141
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January 31, 2023
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Extract_markers.py: input database path format
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3
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124
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January 18, 2023
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Metaphlan-strainphlan: sam.bz2
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2
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124
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January 18, 2023
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Visualization with GraPhlAn not generating appropriate plots. Missing nodes and labels
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6
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196
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December 19, 2022
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StrainPhlan4: No markers were found for the clade
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3
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282
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November 11, 2022
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StrainPhlAn - Secondary references and samples
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2
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158
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August 25, 2022
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Metadata form for strain_transmission.py -h
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1
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245
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August 12, 2022
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BLAST - Local id is too long
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2
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501
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August 12, 2022
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Metaphlan output estimated reads mapped to known clades
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1
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152
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August 12, 2022
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Biobakery workflow fails all tasks
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3
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254
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August 8, 2022
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Metaphlan-Strainphlan discrepancy
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1
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172
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July 28, 2022
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Marker gene identification within the multiple sequence alignment from StrainPhlAn
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4
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245
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July 22, 2022
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StrainPhlAn execution failed due to too many discarded
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1
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238
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July 18, 2022
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Mutation rate calculation
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1
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177
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July 18, 2022
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