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About the StrainPhlAn category
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0
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699
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November 12, 2019
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Using strainphlan with long reads?
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1
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4
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March 18, 2025
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Filtering settings StrainPhlAn 4.1
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8
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20
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February 26, 2025
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Multiple reference genomes not in the output tree
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4
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894
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March 26, 2021
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Sample2markers don't generate any pkl files, but instead generate json.bz2 files
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6
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202
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February 14, 2025
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How to get strainphlan4 corresponding image installation mode?
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0
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5
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February 6, 2025
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Understanding strain_transmission.py output and "list index out of range" error
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0
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19
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January 23, 2025
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Samples2markers.py: MarkerXX not in the metaphlan database
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2
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26
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November 5, 2024
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Sample2markers.py faced Error
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1
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87
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October 24, 2024
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Inquiry regarding change of default parameters in StrainPhlAn
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1
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51
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September 23, 2024
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StrainPhlan clade "s__Akkermansia_muciniphila" not accepted and should provide in SGB format
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5
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573
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September 23, 2024
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StrainPhlan sample2markers.py loading database
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1
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32
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September 23, 2024
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Strainphlan consensus markers
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1
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54
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September 23, 2024
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StrainPhlAn Tutorial Error
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0
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38
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August 25, 2024
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Problem running StrainPhlan
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6
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1334
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August 21, 2024
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StrainPhLan4 and GTDB
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0
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40
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July 15, 2024
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Samfile error when applying strainphlan to output .bz2 files of metaphlan
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2
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244
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July 3, 2024
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Strain_transmission.py not detecting transmission events
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10
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540
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June 5, 2024
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The number of "samples" in strainphlan's result file exceeded the number of my macro gene sequencing samples
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1
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87
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June 4, 2024
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Error occuring at Phylophlan execution while running Strainphlan 4
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3
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331
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June 4, 2024
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Couldnt create consensus markers
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1
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77
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June 3, 2024
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StrainPhlAn Usage for Bacterial SNP Annotation
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2
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199
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May 23, 2024
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StrainPhlan 4 tutorial issues
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3
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623
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March 22, 2024
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Request to determine the threshold for strain transfer
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1
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203
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March 18, 2024
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Phylophlan mafft problem (implemented in strainphlan)
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5
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1587
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March 18, 2024
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Strainphlan: [e] Parallel execution fails: Ran out of input
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1
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114
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March 14, 2024
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PhyloPhlAn database error during StrainPhlAn 4 run
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11
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857
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March 8, 2024
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Query on Strain Identification Methods and Comparisons in StrainPhlAn4 Usage
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0
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207
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December 20, 2023
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Encountering an error in sample2markers.py -i SRS013951.sam.bz2 -o pkl_files/
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4
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314
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November 11, 2023
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NaN value after distmat in StrainPhlAn
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3
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362
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October 12, 2023
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