About the StrainPhlAn category
|
|
0
|
449
|
November 12, 2019
|
Options to adjust thresholds to work around 'too many samples discarded' issue
|
|
0
|
7
|
May 25, 2023
|
Metaphlan4 and graphlan compatability
|
|
1
|
36
|
May 9, 2023
|
Problem extracting the species marker genes from metaphlan4 database
|
|
1
|
36
|
May 9, 2023
|
A Error occurred by running StrainPhlAn(4.0.6), this error is [Error] Phylogeny can not be inferred. Too many samples were discarded
|
|
5
|
120
|
May 9, 2023
|
Strainphlan Version 4.0.6 Error AttributeError: 'Seq' object has no attribute 'replace'
|
|
2
|
86
|
May 8, 2023
|
Processing samples... error during StrainPhlAn 4 run
|
|
1
|
87
|
April 20, 2023
|
PhyloPhlAn database error during StrainPhlAn 4 run
|
|
10
|
155
|
April 15, 2023
|
Calculating the strain transmission in different body sites?
|
|
1
|
49
|
April 14, 2023
|
Too many samples discarded
|
|
7
|
90
|
April 5, 2023
|
Dealing with "Too many samples were discarded"
|
|
3
|
71
|
March 30, 2023
|
Strainphlan shallow shotgun sequencing data
|
|
1
|
105
|
March 23, 2023
|
Subtrees from StrainPhlAn3
|
|
1
|
82
|
February 27, 2023
|
Polymorphic rate and single dominant strain
|
|
10
|
117
|
February 24, 2023
|
StrainPhlAn output file
|
|
1
|
76
|
February 21, 2023
|
AttributeError: 'Seq' object has no attribute 'replace'
|
|
4
|
210
|
February 17, 2023
|
StrainPhlan clade "s__Akkermansia_muciniphila" not accepted and should provide in SGB format
|
|
1
|
141
|
January 31, 2023
|
Extract_markers.py: input database path format
|
|
3
|
124
|
January 18, 2023
|
Metaphlan-strainphlan: sam.bz2
|
|
2
|
124
|
January 18, 2023
|
Visualization with GraPhlAn not generating appropriate plots. Missing nodes and labels
|
|
6
|
196
|
December 19, 2022
|
StrainPhlan4: No markers were found for the clade
|
|
3
|
282
|
November 11, 2022
|
StrainPhlAn - Secondary references and samples
|
|
2
|
158
|
August 25, 2022
|
Metadata form for strain_transmission.py -h
|
|
1
|
245
|
August 12, 2022
|
BLAST - Local id is too long
|
|
2
|
501
|
August 12, 2022
|
Metaphlan output estimated reads mapped to known clades
|
|
1
|
152
|
August 12, 2022
|
Biobakery workflow fails all tasks
|
|
3
|
254
|
August 8, 2022
|
Metaphlan-Strainphlan discrepancy
|
|
1
|
172
|
July 28, 2022
|
Marker gene identification within the multiple sequence alignment from StrainPhlAn
|
|
4
|
245
|
July 22, 2022
|
StrainPhlAn execution failed due to too many discarded
|
|
1
|
238
|
July 18, 2022
|
Mutation rate calculation
|
|
1
|
177
|
July 18, 2022
|