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About the StrainPhlAn category
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0
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287
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November 12, 2019
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Humann3 intermediate output file (sam) for strainphlan
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0
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5
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May 12, 2022
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How to creat sam.bz2 with already run metaphlan with the output of profile.txt and bowtie2 file
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2
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18
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April 24, 2022
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Could not add metadata to StrainPhlan output
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1
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24
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April 13, 2022
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Deeper issue to "Phylogeny can not be inferred. Too many samples were discarded"
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5
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53
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March 7, 2022
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How do I get what strains are present in each sample?
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1
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37
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March 7, 2022
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Samtools not recognized by sample2markers.py?
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2
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42
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February 22, 2022
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Samtools view trouble reading files
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2
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41
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February 11, 2022
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Marker gene identification within the multiple sequence alignment from StrainPhlAn
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1
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56
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February 3, 2022
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Strainphlan sample2markers.py AttributeError: 'NoneType' object has no attribute 'reference_free_consensus'
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3
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115
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August 5, 2021
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Single dominant species in non-gut microbiome
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2
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66
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December 11, 2021
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Multiple interrelated species (Streptococci)
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3
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96
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November 29, 2021
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Biobakery workflows strainphlan failed due to makeblastdb error
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2
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96
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November 19, 2021
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Where can i get metaphlan_databases information？
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1
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120
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October 26, 2021
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Understanding StrainPhlAn for beginners
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3
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160
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September 29, 2021
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Length of concatenated alignment file
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12
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156
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August 31, 2021
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Identifying Strain Names
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1
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185
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August 23, 2021
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Distmat from strainphlan tutorial
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1
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151
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July 22, 2021
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Check number of markers for a particular bacterial species
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1
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103
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July 22, 2021
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Change coverage threshold for consensus markers
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3
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111
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June 15, 2021
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Help with workflow
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3
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156
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June 15, 2021
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"N" in strainphlan alignment output
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6
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226
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June 10, 2021
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Understanding branch length from strainphlan output
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3
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175
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June 9, 2021
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Metaphlan & Strainphlan Output Expectation
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2
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251
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May 29, 2021
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Strainphlan_config & Not found output/mutation_rates.tsv
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1
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184
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May 3, 2021
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Error when running extract_markers.py
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22
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1243
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April 22, 2021
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Strainphlan Error: No matching key/data pair found
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1
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192
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April 19, 2021
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Problem running StrainPhlan
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5
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331
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April 9, 2021
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Multiple reference genomes not in the output tree
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4
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200
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March 26, 2021
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Run all clades once
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5
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326
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March 19, 2021
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