|
About the StrainPhlAn category
|
|
0
|
688
|
November 12, 2019
|
|
Understanding strain_transmission.py output and "list index out of range" error
|
|
0
|
4
|
January 23, 2025
|
|
Samples2markers.py: MarkerXX not in the metaphlan database
|
|
2
|
19
|
November 5, 2024
|
|
Sample2markers.py faced Error
|
|
1
|
82
|
October 24, 2024
|
|
Inquiry regarding change of default parameters in StrainPhlAn
|
|
1
|
43
|
September 23, 2024
|
|
StrainPhlan clade "s__Akkermansia_muciniphila" not accepted and should provide in SGB format
|
|
5
|
565
|
September 23, 2024
|
|
StrainPhlan sample2markers.py loading database
|
|
1
|
24
|
September 23, 2024
|
|
Strainphlan consensus markers
|
|
1
|
46
|
September 23, 2024
|
|
StrainPhlAn Tutorial Error
|
|
0
|
31
|
August 25, 2024
|
|
Problem running StrainPhlan
|
|
6
|
1326
|
August 21, 2024
|
|
StrainPhLan4 and GTDB
|
|
0
|
35
|
July 15, 2024
|
|
Samfile error when applying strainphlan to output .bz2 files of metaphlan
|
|
2
|
237
|
July 3, 2024
|
|
Strain_transmission.py not detecting transmission events
|
|
10
|
523
|
June 5, 2024
|
|
The number of "samples" in strainphlan's result file exceeded the number of my macro gene sequencing samples
|
|
1
|
87
|
June 4, 2024
|
|
Error occuring at Phylophlan execution while running Strainphlan 4
|
|
3
|
326
|
June 4, 2024
|
|
Couldnt create consensus markers
|
|
1
|
69
|
June 3, 2024
|
|
StrainPhlAn Usage for Bacterial SNP Annotation
|
|
2
|
193
|
May 23, 2024
|
|
Sample2markers don't generate any pkl files, but instead generate json.bz2 files
|
|
5
|
184
|
April 30, 2024
|
|
StrainPhlan 4 tutorial issues
|
|
3
|
613
|
March 22, 2024
|
|
Request to determine the threshold for strain transfer
|
|
1
|
197
|
March 18, 2024
|
|
Phylophlan mafft problem (implemented in strainphlan)
|
|
5
|
1581
|
March 18, 2024
|
|
Strainphlan: [e] Parallel execution fails: Ran out of input
|
|
1
|
111
|
March 14, 2024
|
|
PhyloPhlAn database error during StrainPhlAn 4 run
|
|
11
|
851
|
March 8, 2024
|
|
Query on Strain Identification Methods and Comparisons in StrainPhlAn4 Usage
|
|
0
|
206
|
December 20, 2023
|
|
Encountering an error in sample2markers.py -i SRS013951.sam.bz2 -o pkl_files/
|
|
4
|
309
|
November 11, 2023
|
|
NaN value after distmat in StrainPhlAn
|
|
3
|
362
|
October 12, 2023
|
|
StrainPhlAn no clades found
|
|
0
|
250
|
October 8, 2023
|
|
Strainphlan error
|
|
4
|
292
|
October 6, 2023
|
|
Can I get ID's for the actual strains from strainphlan?
|
|
1
|
170
|
September 22, 2023
|
|
Scripting with strainphlan.py
|
|
3
|
260
|
September 1, 2023
|