Hi, While I was using the Metaphlan4.1.1 sample2markers.py to extract each sample’s marker to the consensus marker directory. The problem occurred. Could you please help me solve that. The database is the latest version.
sample2markers.py -i *.sam.bz2 -o consensus_markers -n 10
Tue Jun 11 18:48:21 2024: Start samples to markers execution
Tue Jun 11 18:48:21 2024: Using samtools version 1.13
Tue Jun 11 18:48:21 2024: Creating temporary directory…
Tue Jun 11 18:48:21 2024: Done.
Tue Jun 11 18:48:21 2024: Filtering SAM files…
Tue Jun 11 18:48:21 2024: Loading MetaPhlAn mpa_vOct22_CHOCOPhlAnSGB_202403 database…
Tue Jun 11 18:48:56 2024: Done.
Tue Jun 11 18:49:34 2024: [Error] Marker UniClust90_MANJGFMI01329|1__8|SGB8130 not in the metaphlan database
Tue Jun 11 18:49:34 2024: Stop execution.
Tue Jun 11 18:49:39 2024: [Error] Marker UniClust90_MANJGFMI01329|1__8|SGB8130 not in the metaphlan database
Tue Jun 11 18:49:39 2024: Stop execution.
Tue Jun 11 18:49:43 2024: [Error] Marker UniRef90_A5YTT9|1__4|SGB8130 not in the metaphlan database
Tue Jun 11 18:49:43 2024: Stop execution.
Tue Jun 11 18:49:48 2024: [Error] Marker UniRef90_D4FSC7|1__14|SGB8130 not in the metaphlan database
Tue Jun 11 18:49:48 2024: Stop execution.
Tue Jun 11 18:49:52 2024: [Error] Marker UniRef90_I0Q4X7|1__15|SGB8130 not in the metaphlan database
Tue Jun 11 18:49:52 2024: Stop execution.
Tue Jun 11 18:49:56 2024: [Error] Marker UniRef90_A5YTT9|1__4|SGB8130 not in the metaphlan database
Tue Jun 11 18:49:56 2024: Stop execution.