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StrainPhlAn Usage for Bacterial SNP Annotation
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2
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276
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May 23, 2024
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StrainPhlan 4 tutorial issues
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3
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799
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March 22, 2024
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Request to determine the threshold for strain transfer
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1
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264
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March 18, 2024
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Phylophlan mafft problem (implemented in strainphlan)
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5
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1622
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March 18, 2024
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Strainphlan: [e] Parallel execution fails: Ran out of input
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1
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138
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March 14, 2024
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PhyloPhlAn database error during StrainPhlAn 4 run
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11
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912
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March 8, 2024
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Query on Strain Identification Methods and Comparisons in StrainPhlAn4 Usage
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0
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233
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December 20, 2023
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Encountering an error in sample2markers.py -i SRS013951.sam.bz2 -o pkl_files/
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4
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357
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November 11, 2023
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NaN value after distmat in StrainPhlAn
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3
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379
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October 12, 2023
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StrainPhlAn no clades found
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0
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270
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October 8, 2023
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Strainphlan error
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4
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318
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October 6, 2023
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Can I get ID's for the actual strains from strainphlan?
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1
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199
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September 22, 2023
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Scripting with strainphlan.py
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3
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301
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September 1, 2023
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Metaphlan4 and graphlan compatability
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2
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385
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August 22, 2023
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NaN value after distmat in StrainPhlAn!
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0
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286
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June 19, 2023
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Options to adjust thresholds to work around 'too many samples discarded' issue
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3
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320
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June 6, 2023
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Problem extracting the species marker genes from metaphlan4 database
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1
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420
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May 9, 2023
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A Error occurred by running StrainPhlAn(4.0.6), this error is [Error] Phylogeny can not be inferred. Too many samples were discarded
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5
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640
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May 9, 2023
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Strainphlan Version 4.0.6 Error AttributeError: 'Seq' object has no attribute 'replace'
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2
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508
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May 8, 2023
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Processing samples... error during StrainPhlAn 4 run
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1
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534
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April 20, 2023
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Calculating the strain transmission in different body sites?
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1
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293
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April 14, 2023
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Too many samples discarded
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7
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639
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April 5, 2023
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Dealing with "Too many samples were discarded"
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3
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462
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March 30, 2023
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Strainphlan shallow shotgun sequencing data
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1
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367
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March 23, 2023
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Subtrees from StrainPhlAn3
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1
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288
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February 27, 2023
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Polymorphic rate and single dominant strain
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10
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454
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February 24, 2023
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StrainPhlAn output file
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1
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311
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February 21, 2023
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AttributeError: 'Seq' object has no attribute 'replace'
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4
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1058
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February 17, 2023
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Extract_markers.py: input database path format
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3
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616
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January 18, 2023
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Metaphlan-strainphlan: sam.bz2
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2
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568
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January 18, 2023
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