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NaN value after distmat in StrainPhlAn
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3
|
362
|
October 12, 2023
|
|
StrainPhlAn no clades found
|
|
0
|
253
|
October 8, 2023
|
|
Strainphlan error
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4
|
296
|
October 6, 2023
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Can I get ID's for the actual strains from strainphlan?
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1
|
174
|
September 22, 2023
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Scripting with strainphlan.py
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3
|
267
|
September 1, 2023
|
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Metaphlan4 and graphlan compatability
|
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2
|
357
|
August 22, 2023
|
|
NaN value after distmat in StrainPhlAn!
|
|
0
|
279
|
June 19, 2023
|
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Options to adjust thresholds to work around 'too many samples discarded' issue
|
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3
|
284
|
June 6, 2023
|
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Problem extracting the species marker genes from metaphlan4 database
|
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1
|
373
|
May 9, 2023
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A Error occurred by running StrainPhlAn(4.0.6), this error is [Error] Phylogeny can not be inferred. Too many samples were discarded
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5
|
600
|
May 9, 2023
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Strainphlan Version 4.0.6 Error AttributeError: 'Seq' object has no attribute 'replace'
|
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2
|
485
|
May 8, 2023
|
|
Processing samples... error during StrainPhlAn 4 run
|
|
1
|
514
|
April 20, 2023
|
|
Calculating the strain transmission in different body sites?
|
|
1
|
257
|
April 14, 2023
|
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Too many samples discarded
|
|
7
|
594
|
April 5, 2023
|
|
Dealing with "Too many samples were discarded"
|
|
3
|
438
|
March 30, 2023
|
|
Strainphlan shallow shotgun sequencing data
|
|
1
|
345
|
March 23, 2023
|
|
Subtrees from StrainPhlAn3
|
|
1
|
256
|
February 27, 2023
|
|
Polymorphic rate and single dominant strain
|
|
10
|
379
|
February 24, 2023
|
|
StrainPhlAn output file
|
|
1
|
296
|
February 21, 2023
|
|
AttributeError: 'Seq' object has no attribute 'replace'
|
|
4
|
1016
|
February 17, 2023
|
|
Extract_markers.py: input database path format
|
|
3
|
554
|
January 18, 2023
|
|
Metaphlan-strainphlan: sam.bz2
|
|
2
|
506
|
January 18, 2023
|
|
Visualization with GraPhlAn not generating appropriate plots. Missing nodes and labels
|
|
6
|
547
|
December 19, 2022
|
|
StrainPhlan4: No markers were found for the clade
|
|
3
|
1072
|
November 11, 2022
|
|
StrainPhlAn - Secondary references and samples
|
|
2
|
340
|
August 25, 2022
|
|
Metadata form for strain_transmission.py -h
|
|
1
|
640
|
August 12, 2022
|
|
BLAST - Local id is too long
|
|
2
|
1530
|
August 12, 2022
|
|
Metaphlan output estimated reads mapped to known clades
|
|
1
|
421
|
August 12, 2022
|
|
Biobakery workflow fails all tasks
|
|
3
|
596
|
August 8, 2022
|
|
Metaphlan-Strainphlan discrepancy
|
|
1
|
625
|
July 28, 2022
|