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Query on Strain Identification Methods and Comparisons in StrainPhlAn4 Usage
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0
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215
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December 20, 2023
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Encountering an error in sample2markers.py -i SRS013951.sam.bz2 -o pkl_files/
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4
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322
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November 11, 2023
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NaN value after distmat in StrainPhlAn
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3
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367
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October 12, 2023
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StrainPhlAn no clades found
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0
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254
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October 8, 2023
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Strainphlan error
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4
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300
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October 6, 2023
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Can I get ID's for the actual strains from strainphlan?
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1
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175
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September 22, 2023
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Scripting with strainphlan.py
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3
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270
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September 1, 2023
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Metaphlan4 and graphlan compatability
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2
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360
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August 22, 2023
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NaN value after distmat in StrainPhlAn!
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0
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279
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June 19, 2023
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Options to adjust thresholds to work around 'too many samples discarded' issue
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3
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288
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June 6, 2023
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Problem extracting the species marker genes from metaphlan4 database
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1
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384
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May 9, 2023
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A Error occurred by running StrainPhlAn(4.0.6), this error is [Error] Phylogeny can not be inferred. Too many samples were discarded
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5
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603
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May 9, 2023
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Strainphlan Version 4.0.6 Error AttributeError: 'Seq' object has no attribute 'replace'
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2
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486
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May 8, 2023
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Processing samples... error during StrainPhlAn 4 run
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1
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516
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April 20, 2023
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Calculating the strain transmission in different body sites?
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1
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259
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April 14, 2023
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Too many samples discarded
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7
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599
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April 5, 2023
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Dealing with "Too many samples were discarded"
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3
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440
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March 30, 2023
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Strainphlan shallow shotgun sequencing data
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1
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345
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March 23, 2023
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Subtrees from StrainPhlAn3
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1
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261
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February 27, 2023
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Polymorphic rate and single dominant strain
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10
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384
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February 24, 2023
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StrainPhlAn output file
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1
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298
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February 21, 2023
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AttributeError: 'Seq' object has no attribute 'replace'
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4
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1023
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February 17, 2023
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Extract_markers.py: input database path format
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3
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560
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January 18, 2023
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Metaphlan-strainphlan: sam.bz2
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2
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520
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January 18, 2023
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Visualization with GraPhlAn not generating appropriate plots. Missing nodes and labels
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6
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552
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December 19, 2022
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StrainPhlan4: No markers were found for the clade
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3
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1082
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November 11, 2022
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StrainPhlAn - Secondary references and samples
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2
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344
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August 25, 2022
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Metadata form for strain_transmission.py -h
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1
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650
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August 12, 2022
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BLAST - Local id is too long
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2
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1549
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August 12, 2022
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Metaphlan output estimated reads mapped to known clades
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1
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428
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August 12, 2022
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