|
Length of concatenated alignment file
|
|
12
|
232
|
August 31, 2021
|
|
Identifying Strain Names
|
|
1
|
296
|
August 23, 2021
|
|
Distmat from strainphlan tutorial
|
|
1
|
218
|
July 22, 2021
|
|
Check number of markers for a particular bacterial species
|
|
1
|
130
|
July 22, 2021
|
|
Change coverage threshold for consensus markers
|
|
3
|
196
|
June 15, 2021
|
|
Help with workflow
|
|
3
|
242
|
June 15, 2021
|
|
"N" in strainphlan alignment output
|
|
6
|
323
|
June 10, 2021
|
|
Understanding branch length from strainphlan output
|
|
3
|
214
|
June 9, 2021
|
|
Metaphlan & Strainphlan Output Expectation
|
|
2
|
368
|
May 29, 2021
|
|
Strainphlan_config & Not found output/mutation_rates.tsv
|
|
1
|
249
|
May 3, 2021
|
|
Error when running extract_markers.py
|
|
22
|
1570
|
April 22, 2021
|
|
Strainphlan Error: No matching key/data pair found
|
|
1
|
235
|
April 19, 2021
|
|
Problem running StrainPhlan
|
|
5
|
511
|
April 9, 2021
|
|
Multiple reference genomes not in the output tree
|
|
4
|
299
|
March 26, 2021
|
|
Run all clades once
|
|
5
|
515
|
March 19, 2021
|
|
Strainphlan question on get the strain info
|
|
3
|
620
|
March 8, 2021
|
|
Error running strainphlan
|
|
9
|
1101
|
February 12, 2021
|
|
Strainphlan without an internet connection
|
|
14
|
595
|
February 12, 2021
|
|
Verbose output for strainphlan
|
|
1
|
171
|
February 8, 2021
|
|
Output phylogeny from [tree1] not recognized
|
|
2
|
256
|
February 8, 2021
|
|
Strainphlan sample2markers.py no module named cmseq
|
|
8
|
440
|
February 4, 2021
|
|
Tutorial is listing the wrong docker container
|
|
1
|
256
|
February 4, 2021
|
|
QUESTION: StrainPhlAn working with a genome?
|
|
3
|
432
|
January 18, 2021
|
|
Strainphlan_print_clades failed using BioBakery Docker Container
|
|
1
|
190
|
January 15, 2021
|
|
Fail to produce the consensus-marker files
|
|
4
|
391
|
December 24, 2020
|
|
No module named metaphlan.utils.cmseq
|
|
13
|
602
|
December 1, 2020
|
|
Question About StrainPhlAn3 Polymorphic Output File
|
|
4
|
423
|
November 30, 2020
|
|
Having issues with Strainphlan
|
|
15
|
1583
|
November 27, 2020
|
|
Error related to step 3; reference genome
|
|
5
|
705
|
November 23, 2020
|
|
Where is strainphlan_ggtree.R and strainphlan_ordination.R
|
|
2
|
562
|
October 8, 2020
|