|
Couldnt create consensus markers
|
|
1
|
116
|
June 3, 2024
|
|
StrainPhlAn Usage for Bacterial SNP Annotation
|
|
2
|
288
|
May 23, 2024
|
|
StrainPhlan 4 tutorial issues
|
|
3
|
828
|
March 22, 2024
|
|
Request to determine the threshold for strain transfer
|
|
1
|
280
|
March 18, 2024
|
|
Phylophlan mafft problem (implemented in strainphlan)
|
|
5
|
1641
|
March 18, 2024
|
|
Strainphlan: [e] Parallel execution fails: Ran out of input
|
|
1
|
145
|
March 14, 2024
|
|
PhyloPhlAn database error during StrainPhlAn 4 run
|
|
11
|
941
|
March 8, 2024
|
|
Query on Strain Identification Methods and Comparisons in StrainPhlAn4 Usage
|
|
0
|
241
|
December 20, 2023
|
|
Encountering an error in sample2markers.py -i SRS013951.sam.bz2 -o pkl_files/
|
|
4
|
371
|
November 11, 2023
|
|
NaN value after distmat in StrainPhlAn
|
|
3
|
389
|
October 12, 2023
|
|
StrainPhlAn no clades found
|
|
0
|
274
|
October 8, 2023
|
|
Strainphlan error
|
|
4
|
330
|
October 6, 2023
|
|
Can I get ID's for the actual strains from strainphlan?
|
|
1
|
206
|
September 22, 2023
|
|
Scripting with strainphlan.py
|
|
3
|
314
|
September 1, 2023
|
|
Metaphlan4 and graphlan compatability
|
|
2
|
393
|
August 22, 2023
|
|
NaN value after distmat in StrainPhlAn!
|
|
0
|
290
|
June 19, 2023
|
|
Options to adjust thresholds to work around 'too many samples discarded' issue
|
|
3
|
335
|
June 6, 2023
|
|
Problem extracting the species marker genes from metaphlan4 database
|
|
1
|
431
|
May 9, 2023
|
|
A Error occurred by running StrainPhlAn(4.0.6), this error is [Error] Phylogeny can not be inferred. Too many samples were discarded
|
|
5
|
654
|
May 9, 2023
|
|
Strainphlan Version 4.0.6 Error AttributeError: 'Seq' object has no attribute 'replace'
|
|
2
|
517
|
May 8, 2023
|
|
Processing samples... error during StrainPhlAn 4 run
|
|
1
|
539
|
April 20, 2023
|
|
Calculating the strain transmission in different body sites?
|
|
1
|
313
|
April 14, 2023
|
|
Too many samples discarded
|
|
7
|
655
|
April 5, 2023
|
|
Dealing with "Too many samples were discarded"
|
|
3
|
472
|
March 30, 2023
|
|
Strainphlan shallow shotgun sequencing data
|
|
1
|
375
|
March 23, 2023
|
|
Subtrees from StrainPhlAn3
|
|
1
|
295
|
February 27, 2023
|
|
Polymorphic rate and single dominant strain
|
|
10
|
485
|
February 24, 2023
|
|
StrainPhlAn output file
|
|
1
|
317
|
February 21, 2023
|
|
AttributeError: 'Seq' object has no attribute 'replace'
|
|
4
|
1071
|
February 17, 2023
|
|
Extract_markers.py: input database path format
|
|
3
|
632
|
January 18, 2023
|