Polymorphic rate and single dominant strain
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10
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301
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February 24, 2023
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StrainPhlAn output file
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1
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245
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February 21, 2023
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AttributeError: 'Seq' object has no attribute 'replace'
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4
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801
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February 17, 2023
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StrainPhlan clade "s__Akkermansia_muciniphila" not accepted and should provide in SGB format
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1
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438
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January 31, 2023
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Extract_markers.py: input database path format
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3
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434
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January 18, 2023
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Metaphlan-strainphlan: sam.bz2
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2
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393
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January 18, 2023
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Visualization with GraPhlAn not generating appropriate plots. Missing nodes and labels
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6
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412
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December 19, 2022
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StrainPhlan4: No markers were found for the clade
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3
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806
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November 11, 2022
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StrainPhlAn - Secondary references and samples
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2
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272
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August 25, 2022
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Metadata form for strain_transmission.py -h
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1
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455
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August 12, 2022
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BLAST - Local id is too long
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2
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1219
|
August 12, 2022
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Metaphlan output estimated reads mapped to known clades
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1
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352
|
August 12, 2022
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Biobakery workflow fails all tasks
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3
|
498
|
August 8, 2022
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Metaphlan-Strainphlan discrepancy
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1
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418
|
July 28, 2022
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Marker gene identification within the multiple sequence alignment from StrainPhlAn
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4
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420
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July 22, 2022
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StrainPhlAn execution failed due to too many discarded
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1
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348
|
July 18, 2022
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Mutation rate calculation
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1
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319
|
July 18, 2022
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Strainphlan execution failed due to too many discarded samples
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8
|
574
|
July 5, 2022
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No alignments found to concatenate
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5
|
388
|
June 30, 2022
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Where do reference genome marker sequences come from?
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3
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434
|
June 28, 2022
|
StrainPhlan plots questions
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3
|
350
|
June 3, 2022
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Getting strain counts from StrainPhlAn
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4
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346
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June 1, 2022
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Phylogeny can not be inferred. No enough markers were kept for the samples
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4
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326
|
May 31, 2022
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Humann3 intermediate output file (sam) for strainphlan
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4
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405
|
May 20, 2022
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How to creat sam.bz2 with already run metaphlan with the output of profile.txt and bowtie2 file
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2
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338
|
April 24, 2022
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Could not add metadata to StrainPhlan output
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1
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335
|
April 13, 2022
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Deeper issue to "Phylogeny can not be inferred. Too many samples were discarded"
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5
|
704
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March 7, 2022
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How do I get what strains are present in each sample?
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1
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279
|
March 7, 2022
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Samtools not recognized by sample2markers.py?
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2
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386
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February 22, 2022
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Samtools view trouble reading files
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2
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1123
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February 11, 2022
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