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Options to adjust thresholds to work around 'too many samples discarded' issue
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3
|
273
|
June 6, 2023
|
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Problem extracting the species marker genes from metaphlan4 database
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1
|
340
|
May 9, 2023
|
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A Error occurred by running StrainPhlAn(4.0.6), this error is [Error] Phylogeny can not be inferred. Too many samples were discarded
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5
|
579
|
May 9, 2023
|
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Strainphlan Version 4.0.6 Error AttributeError: 'Seq' object has no attribute 'replace'
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2
|
479
|
May 8, 2023
|
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Processing samples... error during StrainPhlAn 4 run
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1
|
503
|
April 20, 2023
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Calculating the strain transmission in different body sites?
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1
|
245
|
April 14, 2023
|
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Too many samples discarded
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7
|
552
|
April 5, 2023
|
|
Dealing with "Too many samples were discarded"
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3
|
427
|
March 30, 2023
|
|
Strainphlan shallow shotgun sequencing data
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|
1
|
335
|
March 23, 2023
|
|
Subtrees from StrainPhlAn3
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|
1
|
252
|
February 27, 2023
|
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Polymorphic rate and single dominant strain
|
|
10
|
372
|
February 24, 2023
|
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StrainPhlAn output file
|
|
1
|
289
|
February 21, 2023
|
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AttributeError: 'Seq' object has no attribute 'replace'
|
|
4
|
1002
|
February 17, 2023
|
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Extract_markers.py: input database path format
|
|
3
|
536
|
January 18, 2023
|
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Metaphlan-strainphlan: sam.bz2
|
|
2
|
489
|
January 18, 2023
|
|
Visualization with GraPhlAn not generating appropriate plots. Missing nodes and labels
|
|
6
|
537
|
December 19, 2022
|
|
StrainPhlan4: No markers were found for the clade
|
|
3
|
1039
|
November 11, 2022
|
|
StrainPhlAn - Secondary references and samples
|
|
2
|
329
|
August 25, 2022
|
|
Metadata form for strain_transmission.py -h
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|
1
|
596
|
August 12, 2022
|
|
BLAST - Local id is too long
|
|
2
|
1468
|
August 12, 2022
|
|
Metaphlan output estimated reads mapped to known clades
|
|
1
|
409
|
August 12, 2022
|
|
Biobakery workflow fails all tasks
|
|
3
|
588
|
August 8, 2022
|
|
Metaphlan-Strainphlan discrepancy
|
|
1
|
610
|
July 28, 2022
|
|
Marker gene identification within the multiple sequence alignment from StrainPhlAn
|
|
4
|
517
|
July 22, 2022
|
|
StrainPhlAn execution failed due to too many discarded
|
|
1
|
393
|
July 18, 2022
|
|
Mutation rate calculation
|
|
1
|
404
|
July 18, 2022
|
|
Strainphlan execution failed due to too many discarded samples
|
|
8
|
735
|
July 5, 2022
|
|
No alignments found to concatenate
|
|
5
|
496
|
June 30, 2022
|
|
Where do reference genome marker sequences come from?
|
|
3
|
545
|
June 28, 2022
|
|
StrainPhlan plots questions
|
|
3
|
424
|
June 3, 2022
|