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Couldnt create consensus markers
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1
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117
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June 3, 2024
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StrainPhlAn Usage for Bacterial SNP Annotation
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2
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291
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May 23, 2024
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StrainPhlan 4 tutorial issues
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3
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830
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March 22, 2024
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Request to determine the threshold for strain transfer
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1
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283
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March 18, 2024
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Phylophlan mafft problem (implemented in strainphlan)
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5
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1641
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March 18, 2024
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Strainphlan: [e] Parallel execution fails: Ran out of input
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1
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147
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March 14, 2024
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PhyloPhlAn database error during StrainPhlAn 4 run
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11
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943
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March 8, 2024
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Query on Strain Identification Methods and Comparisons in StrainPhlAn4 Usage
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0
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245
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December 20, 2023
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Encountering an error in sample2markers.py -i SRS013951.sam.bz2 -o pkl_files/
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4
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371
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November 11, 2023
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NaN value after distmat in StrainPhlAn
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3
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389
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October 12, 2023
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StrainPhlAn no clades found
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0
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274
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October 8, 2023
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Strainphlan error
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4
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331
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October 6, 2023
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Can I get ID's for the actual strains from strainphlan?
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1
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209
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September 22, 2023
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Scripting with strainphlan.py
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3
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316
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September 1, 2023
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Metaphlan4 and graphlan compatability
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2
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394
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August 22, 2023
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NaN value after distmat in StrainPhlAn!
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0
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290
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June 19, 2023
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Options to adjust thresholds to work around 'too many samples discarded' issue
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3
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340
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June 6, 2023
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Problem extracting the species marker genes from metaphlan4 database
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1
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433
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May 9, 2023
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A Error occurred by running StrainPhlAn(4.0.6), this error is [Error] Phylogeny can not be inferred. Too many samples were discarded
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5
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657
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May 9, 2023
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Strainphlan Version 4.0.6 Error AttributeError: 'Seq' object has no attribute 'replace'
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2
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518
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May 8, 2023
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Processing samples... error during StrainPhlAn 4 run
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1
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539
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April 20, 2023
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Calculating the strain transmission in different body sites?
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1
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314
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April 14, 2023
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Too many samples discarded
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7
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655
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April 5, 2023
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Dealing with "Too many samples were discarded"
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3
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472
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March 30, 2023
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Strainphlan shallow shotgun sequencing data
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1
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375
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March 23, 2023
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Subtrees from StrainPhlAn3
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1
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296
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February 27, 2023
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Polymorphic rate and single dominant strain
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10
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486
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February 24, 2023
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StrainPhlAn output file
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1
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317
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February 21, 2023
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AttributeError: 'Seq' object has no attribute 'replace'
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4
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1072
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February 17, 2023
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Extract_markers.py: input database path format
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3
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635
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January 18, 2023
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