Can I get ID's for the actual strains from strainphlan?

I have run metaphlan and strainphlan on my samples following the tutorial. It all seems to have worked, however when I visualise the output RAxML_bestTree.t__SGB7852.StrainPhlAn4.tre file there is no ID on what strains are present, the branches just differentiate by the sample name.

Is it possible to get the actual strain names from strainphlan?

Hi @mradz19
Sorry for the misundertanding, StrainPhlan do not report strain IDs but builds strain-level phylogenies using the reconstructed consensus sequences directly from the metagenomic reads.