I am using
StrainPhlAn 3.0 to analyze metagenomic sequencing data to obtain the SNP results of several species. When i using
StrainPhlAn 3.0 workflow, I need to clarify the species information, such as:
extract_markers.py -c s__Ruminococcus_sp_5_1_39BFAA -o db_markers/
I know that the metaphlan_databases information is used in this analysis, but the database file is a .pkl file.
My question is, where can I get the species information stored in the metaphlan_databases? This is more beneficial to my analysis