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Marker gene identification within the multiple sequence alignment from StrainPhlAn
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4
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546
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July 22, 2022
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StrainPhlAn execution failed due to too many discarded
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1
|
395
|
July 18, 2022
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Mutation rate calculation
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1
|
420
|
July 18, 2022
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Strainphlan execution failed due to too many discarded samples
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8
|
757
|
July 5, 2022
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No alignments found to concatenate
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5
|
507
|
June 30, 2022
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Where do reference genome marker sequences come from?
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3
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579
|
June 28, 2022
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StrainPhlan plots questions
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3
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435
|
June 3, 2022
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Getting strain counts from StrainPhlAn
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4
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458
|
June 1, 2022
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Phylogeny can not be inferred. No enough markers were kept for the samples
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4
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449
|
May 31, 2022
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Humann3 intermediate output file (sam) for strainphlan
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4
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482
|
May 20, 2022
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How to creat sam.bz2 with already run metaphlan with the output of profile.txt and bowtie2 file
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2
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421
|
April 24, 2022
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Could not add metadata to StrainPhlan output
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1
|
451
|
April 13, 2022
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Deeper issue to "Phylogeny can not be inferred. Too many samples were discarded"
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5
|
894
|
March 7, 2022
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How do I get what strains are present in each sample?
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1
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320
|
March 7, 2022
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Samtools not recognized by sample2markers.py?
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2
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456
|
February 22, 2022
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Samtools view trouble reading files
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2
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1262
|
February 11, 2022
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Strainphlan sample2markers.py AttributeError: 'NoneType' object has no attribute 'reference_free_consensus'
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3
|
444
|
August 5, 2021
|
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Single dominant species in non-gut microbiome
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2
|
307
|
December 11, 2021
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Multiple interrelated species (Streptococci)
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3
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506
|
November 29, 2021
|
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Biobakery workflows strainphlan failed due to makeblastdb error
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2
|
846
|
November 19, 2021
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Where can i get metaphlan_databases information？
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1
|
410
|
October 26, 2021
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Understanding StrainPhlAn for beginners
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3
|
1809
|
September 29, 2021
|
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Length of concatenated alignment file
|
|
12
|
580
|
August 31, 2021
|
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Identifying Strain Names
|
|
1
|
846
|
August 23, 2021
|
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Distmat from strainphlan tutorial
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1
|
556
|
July 22, 2021
|
|
Check number of markers for a particular bacterial species
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1
|
296
|
July 22, 2021
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Change coverage threshold for consensus markers
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3
|
464
|
June 15, 2021
|
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Help with workflow
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3
|
519
|
June 15, 2021
|
|
"N" in strainphlan alignment output
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6
|
732
|
June 10, 2021
|
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Understanding branch length from strainphlan output
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|
3
|
534
|
June 9, 2021
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