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Metaphlan output estimated reads mapped to known clades
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|
1
|
438
|
August 12, 2022
|
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Biobakery workflow fails all tasks
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3
|
602
|
August 8, 2022
|
|
Metaphlan-Strainphlan discrepancy
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1
|
628
|
July 28, 2022
|
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Marker gene identification within the multiple sequence alignment from StrainPhlAn
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4
|
554
|
July 22, 2022
|
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StrainPhlAn execution failed due to too many discarded
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1
|
396
|
July 18, 2022
|
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Mutation rate calculation
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1
|
422
|
July 18, 2022
|
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Strainphlan execution failed due to too many discarded samples
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|
8
|
761
|
July 5, 2022
|
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No alignments found to concatenate
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5
|
514
|
June 30, 2022
|
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Where do reference genome marker sequences come from?
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3
|
593
|
June 28, 2022
|
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StrainPhlan plots questions
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3
|
439
|
June 3, 2022
|
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Getting strain counts from StrainPhlAn
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4
|
485
|
June 1, 2022
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Phylogeny can not be inferred. No enough markers were kept for the samples
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4
|
454
|
May 31, 2022
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Humann3 intermediate output file (sam) for strainphlan
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4
|
486
|
May 20, 2022
|
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How to creat sam.bz2 with already run metaphlan with the output of profile.txt and bowtie2 file
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2
|
426
|
April 24, 2022
|
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Could not add metadata to StrainPhlan output
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|
1
|
454
|
April 13, 2022
|
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Deeper issue to "Phylogeny can not be inferred. Too many samples were discarded"
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5
|
895
|
March 7, 2022
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How do I get what strains are present in each sample?
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1
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324
|
March 7, 2022
|
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Samtools not recognized by sample2markers.py?
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2
|
460
|
February 22, 2022
|
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Samtools view trouble reading files
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2
|
1269
|
February 11, 2022
|
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Strainphlan sample2markers.py AttributeError: 'NoneType' object has no attribute 'reference_free_consensus'
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|
3
|
450
|
August 5, 2021
|
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Single dominant species in non-gut microbiome
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2
|
313
|
December 11, 2021
|
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Multiple interrelated species (Streptococci)
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|
3
|
513
|
November 29, 2021
|
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Biobakery workflows strainphlan failed due to makeblastdb error
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|
2
|
848
|
November 19, 2021
|
|
Where can i get metaphlan_databases information？
|
|
1
|
413
|
October 26, 2021
|
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Understanding StrainPhlAn for beginners
|
|
3
|
1893
|
September 29, 2021
|
|
Length of concatenated alignment file
|
|
12
|
605
|
August 31, 2021
|
|
Identifying Strain Names
|
|
1
|
854
|
August 23, 2021
|
|
Distmat from strainphlan tutorial
|
|
1
|
557
|
July 22, 2021
|
|
Check number of markers for a particular bacterial species
|
|
1
|
298
|
July 22, 2021
|
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Change coverage threshold for consensus markers
|
|
3
|
467
|
June 15, 2021
|