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Visualization with GraPhlAn not generating appropriate plots. Missing nodes and labels
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6
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588
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December 19, 2022
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StrainPhlan4: No markers were found for the clade
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3
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1151
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November 11, 2022
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StrainPhlAn - Secondary references and samples
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2
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389
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August 25, 2022
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Metadata form for strain_transmission.py -h
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1
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674
|
August 12, 2022
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BLAST - Local id is too long
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2
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1714
|
August 12, 2022
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Metaphlan output estimated reads mapped to known clades
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1
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468
|
August 12, 2022
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Biobakery workflow fails all tasks
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3
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623
|
August 8, 2022
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Metaphlan-Strainphlan discrepancy
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1
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650
|
July 28, 2022
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Marker gene identification within the multiple sequence alignment from StrainPhlAn
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4
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588
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July 22, 2022
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StrainPhlAn execution failed due to too many discarded
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1
|
414
|
July 18, 2022
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Mutation rate calculation
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1
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469
|
July 18, 2022
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Strainphlan execution failed due to too many discarded samples
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8
|
814
|
July 5, 2022
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No alignments found to concatenate
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5
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535
|
June 30, 2022
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Where do reference genome marker sequences come from?
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3
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639
|
June 28, 2022
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StrainPhlan plots questions
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3
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459
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June 3, 2022
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Getting strain counts from StrainPhlAn
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4
|
547
|
June 1, 2022
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Phylogeny can not be inferred. No enough markers were kept for the samples
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4
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477
|
May 31, 2022
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Humann3 intermediate output file (sam) for strainphlan
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4
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509
|
May 20, 2022
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How to creat sam.bz2 with already run metaphlan with the output of profile.txt and bowtie2 file
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2
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452
|
April 24, 2022
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Could not add metadata to StrainPhlan output
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1
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467
|
April 13, 2022
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Deeper issue to "Phylogeny can not be inferred. Too many samples were discarded"
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5
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927
|
March 7, 2022
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How do I get what strains are present in each sample?
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1
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353
|
March 7, 2022
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Samtools not recognized by sample2markers.py?
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2
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486
|
February 22, 2022
|
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Samtools view trouble reading files
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2
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1301
|
February 11, 2022
|
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Strainphlan sample2markers.py AttributeError: 'NoneType' object has no attribute 'reference_free_consensus'
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3
|
485
|
August 5, 2021
|
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Single dominant species in non-gut microbiome
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2
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328
|
December 11, 2021
|
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Multiple interrelated species (Streptococci)
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3
|
533
|
November 29, 2021
|
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Biobakery workflows strainphlan failed due to makeblastdb error
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2
|
864
|
November 19, 2021
|
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Where can i get metaphlan_databases information？
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1
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434
|
October 26, 2021
|
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Understanding StrainPhlAn for beginners
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3
|
2251
|
September 29, 2021
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