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Metaphlan & Strainphlan Output Expectation
|
|
2
|
768
|
May 29, 2021
|
|
Strainphlan_config & Not found output/mutation_rates.tsv
|
|
1
|
474
|
May 3, 2021
|
|
Error when running extract_markers.py
|
|
22
|
3642
|
April 22, 2021
|
|
Strainphlan Error: No matching key/data pair found
|
|
1
|
644
|
April 19, 2021
|
|
Run all clades once
|
|
5
|
938
|
March 19, 2021
|
|
Strainphlan question on get the strain info
|
|
3
|
1352
|
March 8, 2021
|
|
Error running strainphlan
|
|
9
|
2140
|
February 12, 2021
|
|
Strainphlan without an internet connection
|
|
14
|
1245
|
February 12, 2021
|
|
Verbose output for strainphlan
|
|
1
|
306
|
February 8, 2021
|
|
Output phylogeny from [tree1] not recognized
|
|
2
|
505
|
February 8, 2021
|
|
Strainphlan sample2markers.py no module named cmseq
|
|
8
|
780
|
February 4, 2021
|
|
Tutorial is listing the wrong docker container
|
|
1
|
446
|
February 4, 2021
|
|
QUESTION: StrainPhlAn working with a genome?
|
|
3
|
968
|
January 18, 2021
|
|
Strainphlan_print_clades failed using BioBakery Docker Container
|
|
1
|
389
|
January 15, 2021
|
|
Fail to produce the consensus-marker files
|
|
4
|
777
|
December 24, 2020
|
|
No module named metaphlan.utils.cmseq
|
|
13
|
1125
|
December 1, 2020
|
|
Question About StrainPhlAn3 Polymorphic Output File
|
|
4
|
712
|
November 30, 2020
|
|
Having issues with Strainphlan
|
|
15
|
2777
|
November 27, 2020
|
|
Error related to step 3; reference genome
|
|
5
|
1195
|
November 23, 2020
|
|
Where is strainphlan_ggtree.R and strainphlan_ordination.R
|
|
2
|
925
|
October 8, 2020
|
|
Strain Identity Cutoff
|
|
4
|
1050
|
October 2, 2020
|
|
Error during Strainphlan calling blast?
|
|
2
|
684
|
September 1, 2020
|
|
Multiple conspecific strains in the same sample
|
|
1
|
414
|
August 20, 2020
|
|
[e] Phylogeny can not be inferred. Too many markers were discarded
|
|
1
|
1248
|
May 18, 2020
|
|
Question about Srainphlan call phylophlan
|
|
10
|
1810
|
May 12, 2020
|
|
Where is sample_to_markers.py?
|
|
2
|
514
|
May 4, 2020
|
|
Strainphlan.py error
|
|
2
|
1241
|
March 5, 2020
|