Hi, thanks for developing this excellent tool!
I’ve been studying strainphlan2 example from
but when I run step2, I can’t find this
$ python sample_to_markers.py -i sams/*.sam.bz2 -o consensus_markers
would you please tell me where can I download this file ???
I also can’t find
Hi, thanks for getting in contact.
StrainPhlAn2 was an intermediate version that now is not longer available. If you are using the conda version of metaphlan 3.0, you can take a look on this tutorial: https://github.com/biobakery/MetaPhlAn/wiki/StrainPhlAn-3.0
In a short, a similar tutorial to the one you are pointing will be available too