Hi,
I am getting this error in the wmgx workflow. Any help woulld be appreciated.
root@b702f62a28a2:/PG1-Jan2021# biobakery_workflows wmgx --input /PG1-Jan2021/ --output /PG1.bakery --local-jobs 8 --threads 4
(Jan 14 13:42:24) [ 1/52 - 1.92%] **Skipped ** Task 33: strainphlan_sample2markers____PG1_FDSW202636727-1r_HJY3WDSXY_L2_1
(Jan 14 13:42:24) [ 2/52 - 3.85%] **Skipped ** Task 10: metaphlan_count_species
(Jan 14 13:42:24) [ 3/52 - 5.77%] **Skipped ** Task 9: metaphlan_join_taxonomic_profiles
(Jan 14 13:42:24) [ 4/52 - 7.69%] **Skipped ** Task 6: metaphlan____PG1_FDSW202636727-1r_HJY3WDSXY_L2_1
(Jan 14 13:42:24) [ 5/52 - 9.62%] **Skipped ** Task 5: kneaddata_read_count_table
(Jan 14 13:42:24) [ 6/52 - 11.54%] **Skipped ** Task 0: kneaddata____PG1_FDSW202636727-1r_HJY3WDSXY_L2_1
(Jan 14 13:42:24) [ 7/52 - 13.46%] **Skipped ** Task 34: strainphlan_sample2markers____PG1_FDSW202636727-1r_HJY3WDSXY_L2_2
(Jan 14 13:42:24) [ 8/52 - 15.38%] **Skipped ** Task 8: metaphlan____PG1_FDSW202636727-1r_HJY3WDSXY_L2_2
(Jan 14 13:42:24) [ 9/52 - 17.31%] **Skipped ** Task 3: kneaddata____PG1_FDSW202636727-1r_HJY3WDSXY_L2_2
(Jan 14 13:42:24) [ 9/52 - 17.31%] **Ready ** Task 13: humann____PG1_FDSW202636727-1r_HJY3WDSXY_L2_2
(Jan 14 13:42:24) [ 9/52 - 17.31%] **Ready ** Task 35: strainphlan_print_clades
(Jan 14 13:42:24) [ 9/52 - 17.31%] **Ready ** Task 11: humann____PG1_FDSW202636727-1r_HJY3WDSXY_L2_1
(Jan 14 13:42:24) [ 9/52 - 17.31%] **Started ** Task 13: humann____PG1_FDSW202636727-1r_HJY3WDSXY_L2_2
(Jan 14 13:42:24) [ 9/52 - 17.31%] **Started ** Task 35: strainphlan_print_clades
(Jan 14 13:42:24) [ 9/52 - 17.31%] **Started ** Task 11: humann____PG1_FDSW202636727-1r_HJY3WDSXY_L2_1
(Jan 14 13:42:26) [10/52 - 19.23%] **Failed ** Task 35: strainphlan_print_clades
(Jan 14 13:42:26) [11/52 - 21.15%] **Failed ** Task 36: order_clade_list
(Jan 14 13:42:26) [12/52 - 23.08%] **Failed ** Task 37: strainphlan_clade_0
(Jan 14 13:42:26) [13/52 - 25.00%] **Failed ** Task 38: strainphlan_clade_1