|
About the Lefse category
|
|
0
|
2474
|
October 28, 2019
|
|
LEfSe analysis, plotting negative LDA score (log10)
|
|
2
|
2180
|
February 19, 2026
|
|
[Huttenhower Lab Galaxy for LEfSE]
|
|
1
|
117
|
December 10, 2025
|
|
Trying to format LEfSe
|
|
0
|
89
|
September 24, 2025
|
|
No taxa labels after lefse_plot_cladogram.py
|
|
4
|
599
|
August 26, 2025
|
|
Missing Legend in Lefse Cladogram Plot Generated via Conda Environment
|
|
0
|
66
|
July 7, 2025
|
|
LEfSe issues and errors
|
|
39
|
5414
|
March 13, 2025
|
|
Need Help with Galaxy LEfSe LDA Step Error
|
|
1
|
82
|
February 27, 2025
|
|
How to include other subclades/taxa in the resulting plot?
|
|
1
|
98
|
February 18, 2025
|
|
Print all groups that satisfy the p-value cutoff in .res file (not just top lda group)
|
|
0
|
44
|
November 27, 2024
|
|
Different results with LEfSe on between Galaxy and Conda
|
|
3
|
395
|
November 18, 2024
|
|
Exporting Results/LDA scores to .tsv with conda?
|
|
3
|
255
|
November 18, 2024
|
|
Lefse_bug LDA run had a bug
|
|
2
|
172
|
November 12, 2024
|
|
Error in when running lefse on Galaxy in step B (LDA effect size)
|
|
0
|
75
|
September 11, 2024
|
|
Number of significantly discriminative features: 311 ( 311 ) before internal wilcoxon
|
|
0
|
85
|
August 14, 2024
|
|
Number of significantly discriminative features: 8 ( 131 ) before internal wilcoxon
|
|
1
|
140
|
August 13, 2024
|
|
Lefse problem with plotting
|
|
1
|
374
|
July 24, 2024
|
|
Lefse error :- No differentially abundant features
|
|
0
|
85
|
July 24, 2024
|
|
rpy2.rinterface.RRuntimeError
|
|
0
|
62
|
July 23, 2024
|
|
Lefse installation
|
|
2
|
298
|
July 18, 2024
|
|
LEfSe for humann3
|
|
2
|
260
|
June 5, 2024
|
|
TypeError: slice indices must be integers or None or have an __index__ method
|
|
1
|
212
|
May 30, 2024
|
|
Problem using LEfSe on Galaxy - can't format data for LEfSe
|
|
7
|
2281
|
May 3, 2024
|
|
LEfSe downstream processing issue: LDA tool not showing any difference between the classes
|
|
0
|
116
|
April 26, 2024
|
|
Unable to access the Galaxy module of lefse
|
|
34
|
4473
|
April 17, 2024
|
|
Tutorial: AttributeError: 'NoneType' object has no attribute 'rownames'AttributeError: 'NoneType' object has no attribute 'rownames'
|
|
2
|
1294
|
April 11, 2024
|
|
LEfSe: one-tailed or two-tailed p-values?
|
|
0
|
117
|
March 17, 2024
|
|
Format input file for Lefse
|
|
33
|
3059
|
March 7, 2024
|
|
Unnable to acces galaxy.biobakery.org - Proxy Error
|
|
6
|
652
|
March 6, 2024
|
|
Does a negative LDA score mean the abundance is less?
|
|
0
|
258
|
March 1, 2024
|