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About the Lefse category
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0
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2432
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October 28, 2019
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LEfSe analysis, plotting negative LDA score (log10)
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2
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2125
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February 19, 2026
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[Huttenhower Lab Galaxy for LEfSE]
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1
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95
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December 10, 2025
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Trying to format LEfSe
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0
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66
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September 24, 2025
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No taxa labels after lefse_plot_cladogram.py
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4
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575
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August 26, 2025
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Missing Legend in Lefse Cladogram Plot Generated via Conda Environment
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0
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46
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July 7, 2025
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LEfSe issues and errors
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39
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5169
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March 13, 2025
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Need Help with Galaxy LEfSe LDA Step Error
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1
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72
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February 27, 2025
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How to include other subclades/taxa in the resulting plot?
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1
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80
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February 18, 2025
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Print all groups that satisfy the p-value cutoff in .res file (not just top lda group)
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0
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30
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November 27, 2024
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Different results with LEfSe on between Galaxy and Conda
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3
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359
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November 18, 2024
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Exporting Results/LDA scores to .tsv with conda?
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3
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237
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November 18, 2024
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Lefse_bug LDA run had a bug
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2
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154
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November 12, 2024
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Error in when running lefse on Galaxy in step B (LDA effect size)
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0
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70
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September 11, 2024
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Number of significantly discriminative features: 311 ( 311 ) before internal wilcoxon
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0
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77
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August 14, 2024
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Number of significantly discriminative features: 8 ( 131 ) before internal wilcoxon
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1
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129
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August 13, 2024
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Lefse problem with plotting
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1
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366
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July 24, 2024
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Lefse error :- No differentially abundant features
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0
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72
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July 24, 2024
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rpy2.rinterface.RRuntimeError
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0
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53
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July 23, 2024
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Lefse installation
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2
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277
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July 18, 2024
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LEfSe for humann3
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2
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232
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June 5, 2024
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TypeError: slice indices must be integers or None or have an __index__ method
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1
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198
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May 30, 2024
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Problem using LEfSe on Galaxy - can't format data for LEfSe
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7
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2240
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May 3, 2024
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LEfSe downstream processing issue: LDA tool not showing any difference between the classes
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0
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110
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April 26, 2024
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Unable to access the Galaxy module of lefse
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34
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4250
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April 17, 2024
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Tutorial: AttributeError: 'NoneType' object has no attribute 'rownames'AttributeError: 'NoneType' object has no attribute 'rownames'
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2
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1245
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April 11, 2024
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LEfSe: one-tailed or two-tailed p-values?
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0
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111
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March 17, 2024
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Format input file for Lefse
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33
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2879
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March 7, 2024
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Unnable to acces galaxy.biobakery.org - Proxy Error
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6
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625
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March 6, 2024
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Does a negative LDA score mean the abundance is less?
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0
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248
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March 1, 2024
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