Lefse_bug LDA run had a bug

Downstream analysis and statistics LEfSe
1

Hi,
I have been using LEfSe in the past and was successfully able to run the full pipeline with the Galaxy LEfSe tool. Now even with old ones that successfully worked in the past I have a problem with B step of Lefse module:

Number of significantly discriminative features: 8 ( 131 ) before internal wilcoxon
Traceback (most recent call last):
File “/galaxy_venv/bin/lefse_run.py”, line 33, in
sys.exit(load_entry_point(‘lefse==1.1.2’, ‘console_scripts’, 'lefse_ru

Thanks for your works

2

I have the same problem as you.

3

Same error in B step with test data (Sample_LefSe_Input)

2024/November/12

Number of significantly discriminative features: 8 ( 131 ) before internal wilcoxon
Traceback (most recent call last):
File “/galaxy_venv/bin/lefse_run.py”, line 33, in
sys.exit(load_entry_point(‘lefse==1.1.2’, ‘console_scripts’, 'lefse_ru