Downstream analysis and statistics

anpan ARepA Name: ARepA User manual || Tutorial microPITA Name: microPITA User manual || Tutorial SparseDOSSA Name: SparseDOSSA User manual || Tutorial CCREPE Name: CCREPE User manual || Tutorial MaAsLin Name: MaAsLin2 User manual || Tutorial BAnOCC Name: BAnOCC User manual || Tutorial LEfSe Name: LEfSe User manual || Tutorial HAllA Name: HAllA User manual || Tutorial MMUPHin Name: MMUPHin User manual || Tutorial

Topic	Replies	Views	Activity
About the Downstream analysis and statistics category Downstream analysis and statistics	0	441	November 12, 2019
The total number of samples used in the model for the association is showing to be 1 MaAsLin	1	11	February 7, 2023
Does Maaslin2 supports longitudinal data analysis? MaAsLin	10	676	February 7, 2023
Choosing analysis method for maaslin2 MaAsLin	5	1356	February 3, 2023
LefSe Galaxy module not working LEfSe	3	40	February 2, 2023
No results at LEfSe analysis LEfSe	3	42	February 1, 2023
Lefse number of samples LEfSe	1	29	January 31, 2023
No access to online leffse LEfSe	7	144	January 31, 2023
Raise embedded.RRuntimeError(_rinterface._geterrmessage()) LEfSe	2	32	January 31, 2023
OSError: cannot load library LEfSe	2	43	January 31, 2023
Cladogram image not showing all species LEfSe	1	44	January 31, 2023
Incorrect name/value in output MaAsLin	5	58	January 25, 2023
How does Maaslin deal with zeros? MaAsLin	4	98	January 24, 2023
Paired Samples with Two Groups? MaAsLin	11	210	January 24, 2023
MaAslin2 Interactions with Gender and Trial MaAsLin	4	77	January 19, 2023
Maaslin not the same results as spearman! MaAsLin	1	33	January 18, 2023
Random effects of cohort/round MaAsLin	1	34	January 16, 2023
Trying to understand coef column (and how to convert it to fold change) MaAsLin	11	706	January 13, 2023
Inputting hierarchy-split counts MaAsLin	4	51	January 10, 2023
Global test statistic in addition to feature-metadata pairs? MaAsLin	1	53	January 9, 2023
Metacyc pathway and Species HAllA	1	26	January 6, 2023
How to choose the results found by different model and transformation/normalization methods? MaAsLin	1	53	January 3, 2023
Setting stepwise reference MaAsLin	1	40	January 3, 2023
Q-values in Maaslin2 MaAsLin	1	46	January 3, 2023
Q-value threshold for significance MaAsLin	2	77	January 2, 2023
Lefse Input file for functional data-TPM or raw counts? LEfSe	1	45	December 20, 2022
How to install the pypi version of LEfSe LEfSe	1	69	December 20, 2022
The way microorganisms are named affect the final results of lefse LEfSe	6	237	December 20, 2022
Maaslin.tar.gz - newest version? MaAsLin	1	49	December 15, 2022
How to handle biological replicates with LEfSe LEfSe	0	60	October 5, 2022