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About the Downstream analysis and statistics category
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0
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327
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November 12, 2019
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Microbiome-metabolite analysis in Maaslin2
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1
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12
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May 13, 2022
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Order of x-axis labels in the scatter plots
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2
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9
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May 13, 2022
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Formatting maaslin plots and heatmap
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2
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281
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May 12, 2022
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Recommanded parameters when using Maaslin2 for Metagenomics data ranging from 0 to 1
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0
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16
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May 8, 2022
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Galaxy module don't show images
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0
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16
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May 6, 2022
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Lefse_plot_res.py plot error - TypeError: slice indices must be integers or None or have an __index__ method
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1
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25
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May 6, 2022
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Can we only use the shotgun metatranscriptome data?
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0
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15
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May 5, 2022
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What does it mean negative LDA scores?
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1
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32
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May 4, 2022
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There no lefse_run.py in conda
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1
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22
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May 4, 2022
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Maaslin significance
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1
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25
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May 4, 2022
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Silence console output when running Maaslin2
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1
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25
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May 4, 2022
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Why am I not obtaining appropriate cladogram?
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2
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30
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May 3, 2022
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Fitting problem only when using random effects
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3
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26
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May 2, 2022
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Error in Step B LDA Effect Size (LEfSe)
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3
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34
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May 2, 2022
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Warning message: geom_smooth() using formula 'y~x"
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2
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33
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May 1, 2022
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Warning messages: Warning messages: 1: In var(if (is.vector(x) || is.factor(x)) x else as.double(x), na.rm = na.rm) : NAs introduced by coercion 2: In xtfrm.data.frame(x) : cannot xtfrm data frames
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2
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60
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May 1, 2022
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Recreating maaslin2-generated graphs starting with raw data
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2
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35
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April 29, 2022
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Nested Random Effects in MaAsLin
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2
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32
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April 29, 2022
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Warning message: In var(if (is.vector(x) || is.factor(x)) x else as.double(x), na.rm = na.rm) when running MaAsLin
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1
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18
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April 29, 2022
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Filter-normalize order and comments on tutorial
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0
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27
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April 21, 2022
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Are there versions of picrust and lefse to install on python 3 interpreters?
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2
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145
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April 20, 2022
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Can we do square root transform of relative abundance before doing LEfSe?
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2
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34
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April 19, 2022
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Multiple variables used as the references
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5
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174
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April 19, 2022
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Less results in local lefse than Galaxy Lefse
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0
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23
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April 14, 2022
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How to interpret maaslin2 results?
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0
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32
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April 7, 2022
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Maaslin input error
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2
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101
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April 5, 2022
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Sign of coef when variables are binary
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2
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41
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April 5, 2022
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Normalize or Trensform?
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1
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71
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April 5, 2022
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Invalid p-value correction options
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1
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50
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April 5, 2022
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