Downstream analysis and statistics

SparseDOSSA Name: SparseDOSSA User manual || Tutorial microPITA Name: microPITA User manual || Tutorial anpan MaAsLin Name: MaAsLin2 User manual || Tutorial ARepA Name: ARepA User manual || Tutorial HAllA Name: HAllA User manual || Tutorial BAnOCC Name: BAnOCC User manual || Tutorial CCREPE Name: CCREPE User manual || Tutorial LEfSe Name: LEfSe User manual || Tutorial MMUPHin Name: MMUPHin User manual || Tutorial

Topic	Replies	Views	Activity
About the Downstream analysis and statistics category Downstream analysis and statistics	0	872	November 12, 2019
Explaining meaning of maaslin3 error messages Downstream analysis and statistics	2	9	October 3, 2025
Maaslin Analysis with Non-clinical data and Small samples MaAsLin	2	15	October 2, 2025
No abundance for several species MaAsLin	4	22	September 30, 2025
Trying to format LEfSe LEfSe	0	9	September 24, 2025
[Huttenhower Lab Galaxy for LEfSE] LEfSe	0	21	September 24, 2025
Criteria for feature selection in MaAsLin3 summary plot Downstream analysis and statistics	1	12	September 15, 2025
Pairwise comparisons with multi-level categorical variable in MaAsLin3 MaAsLin	2	28	September 15, 2025
Suggested min_prevalence and min_abundances for mataphlan or humann inputs in maaslin MaAsLin	3	38	September 5, 2025
Designing a model for repeated measures with treatment over time Downstream analysis and statistics	1	14	September 3, 2025
Maaslin3 not finding significant features despite clustering in ordination Downstream analysis and statistics	2	31	September 2, 2025
Reploting MaAsLin summary plot for interactions MaAsLin	1	23	September 2, 2025
Dividing an abundance table for multiple Maaslin runs MaAsLin	8	45	September 1, 2025
MaAsLin3 summary plot interpretation MaAsLin	7	74	August 28, 2025
ANPAN outcome only accept binominal or numeric variables anpan	2	15	August 28, 2025
No taxa labels after lefse_plot_cladogram.py LEfSe	4	539	August 26, 2025
MaAsLin3 setup for multiple small and large random effects MaAsLin	1	45	August 22, 2025
Maaslin3 filtering out different features to Maaslin2 Downstream analysis and statistics	3	99	August 22, 2025
Possible to make a Github release for MaAsLin3 Downstream analysis and statistics	5	40	August 19, 2025
MaAslin3 RAM memory MaAsLin	1	24	August 14, 2025
Maaslin3: Low Diversity and Biomass MaAsLin	1	27	August 8, 2025
Downstream meta-analysis from IBD Plexus metagenomics data MaAsLin	2	32	August 7, 2025
Loss of feature with Maaslin3 MaAsLin	1	37	August 2, 2025
Maaslin2 "coef" interpretation MaAsLin	2	85	July 23, 2025
Understanding Fixed Effects in Maaslin3 Microbiome Analysis MaAsLin	1	70	July 18, 2025
How to adjust summary plot figure Downstream analysis and statistics	3	47	July 18, 2025
Halla keeps failing even with documents that previously worked HAllA	0	11	July 17, 2025
Random effect participant ID - categorical MaAsLin	2	37	July 16, 2025
Zero filtering of custom Log Ratio data for MaAsLin3 MaAsLin	4	41	July 10, 2025
All associations had errors or were insignificant MaAsLin	11	105	July 9, 2025