Downstream analysis and statistics

SparseDOSSA Name: SparseDOSSA User manual || Tutorial microPITA Name: microPITA User manual || Tutorial anpan ARepA Name: ARepA User manual || Tutorial HAllA Name: HAllA User manual || Tutorial BAnOCC Name: BAnOCC User manual || Tutorial CCREPE Name: CCREPE User manual || Tutorial MaAsLin Name: MaAsLin2 User manual || Tutorial MMUPHin Name: MMUPHin User manual || Tutorial LEfSe Name: LEfSe User manual || Tutorial

Topic	Replies	Views	Activity
About the Downstream analysis and statistics category Downstream analysis and statistics	0	869	November 12, 2019
Suggested min_prevalence and min_abundances for mataphlan or humann inputs in maaslin MaAsLin	3	25	September 5, 2025
Designing a model for repeated measures with treatment over time Downstream analysis and statistics	1	8	September 3, 2025
Maaslin3 not finding significant features despite clustering in ordination Downstream analysis and statistics	2	24	September 2, 2025
Reploting MaAsLin summary plot for interactions MaAsLin	1	10	September 2, 2025
Dividing an abundance table for multiple Maaslin runs MaAsLin	8	42	September 1, 2025
MaAsLin3 summary plot interpretation MaAsLin	7	48	August 28, 2025
ANPAN outcome only accept binominal or numeric variables anpan	2	13	August 28, 2025
No taxa labels after lefse_plot_cladogram.py LEfSe	4	528	August 26, 2025
MaAsLin3 setup for multiple small and large random effects MaAsLin	1	29	August 22, 2025
Maaslin3 filtering out different features to Maaslin2 Downstream analysis and statistics	3	94	August 22, 2025
Possible to make a Github release for MaAsLin3 Downstream analysis and statistics	5	37	August 19, 2025
MaAslin3 RAM memory MaAsLin	1	17	August 14, 2025
Maaslin3: Low Diversity and Biomass MaAsLin	1	25	August 8, 2025
Downstream meta-analysis from IBD Plexus metagenomics data MaAsLin	2	30	August 7, 2025
Loss of feature with Maaslin3 MaAsLin	1	32	August 2, 2025
Maaslin2 "coef" interpretation MaAsLin	2	72	July 23, 2025
Understanding Fixed Effects in Maaslin3 Microbiome Analysis MaAsLin	1	58	July 18, 2025
How to adjust summary plot figure Downstream analysis and statistics	3	43	July 18, 2025
Halla keeps failing even with documents that previously worked HAllA	0	8	July 17, 2025
Random effect participant ID - categorical MaAsLin	2	35	July 16, 2025
Zero filtering of custom Log Ratio data for MaAsLin3 MaAsLin	4	37	July 10, 2025
All associations had errors or were insignificant MaAsLin	11	99	July 9, 2025
Missing Legend in Lefse Cladogram Plot Generated via Conda Environment LEfSe	0	15	July 7, 2025
MaAsLin3 conda request Downstream analysis and statistics	7	61	June 27, 2025
Trying to understand coef column (and how to convert it to fold change) MaAsLin	17	3808	June 19, 2025
Error message Maaslin3 Downstream analysis and statistics	3	54	June 18, 2025
MaAsLin2: Comparing results with one fixed effect vs many MaAsLin	1	45	June 18, 2025
MaAslin2 Question about gFC calculation and interpretation MaAsLin	1	35	June 16, 2025
LEfSe via galaxy Downstream analysis and statistics	1	52	June 16, 2025