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About the Downstream analysis and statistics category
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0
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931
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November 12, 2019
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Appropriate method for running MaAsLin3 on metagenome counts normalized to reads per million
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4
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11
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October 6, 2026
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Replotting MaAsLin3 output in specific column order
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4
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42
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October 2, 2026
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Trouble with my variables due to experimental design (absolute abundance environmental microbiome data)
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1
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18
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October 2, 2026
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Downloading databases. Problem with Harvard servers?
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0
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12
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September 28, 2026
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TSS normalization for relative abundance input in MaAsLin 3
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1
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29
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September 25, 2026
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MetaPhlAn 4 CHOCOPhlAn SGB Mapping with MetaPhlAn3 texa info
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0
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12
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September 24, 2026
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Read depth and unscaled abundance in MaAsLin3
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4
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40
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September 23, 2026
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MaAsLin3 analysis for longitudinal clinical analysis
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3
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25
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September 22, 2026
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Maaslin_contrast_test() with median_comparison_abundance uses a z-test instead of t-test for linear mixed models
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4
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31
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September 15, 2026
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Issue because of `collapse` version
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1
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19
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September 15, 2026
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Random versus fixed effects
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1
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45
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September 12, 2026
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Using CONQUR-corrected matrices in MaAsLin 3
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1
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17
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September 5, 2026
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HUMAnN: Depth-normalization with spike-ins
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3
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24
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September 5, 2026
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MaAsLin 3 model for paired samples across independent sampling days
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6
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58
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August 30, 2026
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Recommendation for supplementary methods to validate MaAsLin 3 results on MetaPhlAn 4 data
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2
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46
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August 17, 2026
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Maaslin3 output linear association plots blank
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8
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60
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August 13, 2026
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Normalisation (CLR, TSS or NONE) for coverM abundance
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4
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48
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August 13, 2026
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Maaslin3 significant feature not shown in summary plot
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5
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263
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August 8, 2026
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Turn off fitlering in anpan_repeated_measures
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4
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37
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August 6, 2026
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MaAsLin2 coef interpretation
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1
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44
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July 28, 2026
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Rank statistic for enrichment analysis
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1
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33
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July 28, 2026
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The P values generated by Maaslin3
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2
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51
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July 28, 2026
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MaAsLin2: Comparing one value to multiple values simultaneously
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2
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45
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July 15, 2026
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Maaslin3 issue error message
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12
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338
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July 15, 2026
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normalization = "TSS" vs "NONE" for pre-filtered relative abundance data
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2
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69
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July 12, 2026
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MaAsLin3 for metagenomic counts - appropriate normalization settings?
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2
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76
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July 8, 2026
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MaAsLin3, summary plots not generating but association plots are
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3
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69
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July 2, 2026
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HUMAnN 4 outputs and best practices for paired designs
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3
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85
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June 25, 2026
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Error running MTX model 3.0 tutorial
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2
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39
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June 24, 2026
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