Downstream analysis and statistics

SparseDOSSA Name: SparseDOSSA User manual || Tutorial microPITA Name: microPITA User manual || Tutorial anpan ARepA Name: ARepA User manual || Tutorial BAnOCC Name: BAnOCC User manual || Tutorial CCREPE Name: CCREPE User manual || Tutorial HAllA Name: HAllA User manual || Tutorial LEfSe Name: LEfSe User manual || Tutorial MMUPHin Name: MMUPHin User manual || Tutorial MaAsLin Name: MaAsLin2 User manual || Tutorial

Topic	Replies	Views	Activity
About the Downstream analysis and statistics category Downstream analysis and statistics	0	874	November 12, 2019
Total RNA contribution for Metatranscriptomics Analysis with MaAsLin3 MaAsLin	4	18	November 7, 2025
Maaslin3 transformation and normaliazion fix MaAsLin	1	17	November 6, 2025
Maaslin3 issue error message MaAsLin	0	9	November 5, 2025
Question Regarding the Use of MaAsLin3 for Analyzing Differential Abundance/Prevalence of MetaCyc and GMM Metabolic Pathways MaAsLin	4	36	November 4, 2025
Maaslin3 model runs but produce output with no results MaAsLin	5	31	November 4, 2025
Profiling culture strain MaAsLin	1	7	November 4, 2025
Best normalization/transformation strategy in MaAsLin2 for 16S rRNA (Nanopore) data? MaAsLin	2	25	November 4, 2025
Maaslin3 ggplot2 labels error MaAsLin	6	83	November 2, 2025
Halla has no versioned release HAllA	2	22	October 30, 2025
Halla Galaxy tool missing on the Galaxy toolshed HAllA	0	7	October 30, 2025
Testing 4 levels against a control but the results show only two levels MaAsLin	2	15	October 24, 2025
Maaslin3 is running but is not able to generate any results MaAsLin	1	19	October 21, 2025
Error message in Maaslin3 MaAsLin	2	17	October 19, 2025
Question on Paired Design Implementation in MaAsLin3 MaAsLin	2	35	October 16, 2025
Maaslin Analysis with Non-clinical data and Small samples MaAsLin	5	45	October 7, 2025
Explaining meaning of maaslin3 error messages Downstream analysis and statistics	2	29	October 3, 2025
No abundance for several species MaAsLin	4	35	September 30, 2025
Trying to format LEfSe LEfSe	0	32	September 24, 2025
[Huttenhower Lab Galaxy for LEfSE] LEfSe	0	35	September 24, 2025
Criteria for feature selection in MaAsLin3 summary plot Downstream analysis and statistics	1	26	September 15, 2025
Pairwise comparisons with multi-level categorical variable in MaAsLin3 MaAsLin	2	36	September 15, 2025
Suggested min_prevalence and min_abundances for mataphlan or humann inputs in maaslin MaAsLin	3	65	September 5, 2025
Designing a model for repeated measures with treatment over time Downstream analysis and statistics	1	17	September 3, 2025
Maaslin3 not finding significant features despite clustering in ordination Downstream analysis and statistics	2	36	September 2, 2025
Reploting MaAsLin summary plot for interactions MaAsLin	1	35	September 2, 2025
Dividing an abundance table for multiple Maaslin runs MaAsLin	8	49	September 1, 2025
MaAsLin3 summary plot interpretation MaAsLin	7	131	August 28, 2025
ANPAN outcome only accept binominal or numeric variables anpan	2	17	August 28, 2025
No taxa labels after lefse_plot_cladogram.py LEfSe	4	543	August 26, 2025