Downstream analysis and statistics

anpan ARepA Name: ARepA User manual || Tutorial microPITA Name: microPITA User manual || Tutorial CCREPE Name: CCREPE User manual || Tutorial SparseDOSSA Name: SparseDOSSA User manual || Tutorial MaAsLin Name: MaAsLin2 User manual || Tutorial BAnOCC Name: BAnOCC User manual || Tutorial LEfSe Name: LEfSe User manual || Tutorial HAllA Name: HAllA User manual || Tutorial MMUPHin Name: MMUPHin User manual || Tutorial

Topic	Replies	Views	Activity
About the Downstream analysis and statistics category Downstream analysis and statistics	0	509	November 12, 2019
Filtering of features by abundance MaAsLin	4	1181	May 26, 2023
Formula to test multiple variables MaAsLin	3	31	May 26, 2023
The way microorganisms are named affect the final results of lefse LEfSe	7	372	May 25, 2023
Problme with LEfSe using command line interface LEfSe	5	1139	May 25, 2023
Error in adjust_batch: Feature table must be non-negative for normalization! MMUPHin	5	48	May 24, 2023
I can't see why I am getting this error in lefse in conda? LEfSe	5	748	May 24, 2023
Lefse from OTU table LEfSe	0	19	May 23, 2023
Xtfrm error with Maaslin2 default example in R MaAsLin	9	108	May 18, 2023
MaAsLin 2 for longitudinal analysis with different individuals MaAsLin	3	23	May 18, 2023
Empty all_results.tsv files MaAsLin	4	23	May 17, 2023
"Please provide the reference for the variable" error when running Maaslin2 MaAsLin	1	34	May 12, 2023
LefSE not available on new biobakery website? LEfSe	1	77	May 12, 2023
Cannot run Maaslin2 due to lpsymphony errors MaAsLin	1	68	May 8, 2023
Quiet parameter for Maaslin2() MaAsLin	5	77	May 2, 2023
High rates of significant results using NEGBIN MaAsLin	3	78	April 27, 2023
Generating lefse cladogram LEfSe	3	152	April 25, 2023
Error in run_lefse.py LEfSe	1	120	April 24, 2023
What does it mean negative LDA scores? LEfSe	2	1320	April 22, 2023
Settings when analyzing functional abundances MaAsLin	3	72	April 21, 2023
Differential abundance analysis of genes and pathways in metagenomics Downstream analysis and statistics	1	84	April 13, 2023
Maaslin2 taxonomic hierarchy analysis MaAsLin	1	130	April 6, 2023
How to treat the confounders when associating rumen microbiome and methane emission MaAsLin	1	74	April 4, 2023
Format Data for LefSe no working LEfSe	0	85	April 2, 2023
Failled Data upload LEfSe	4	117	April 1, 2023
Error Received- Failed: Please make sure the file is available. (500) LEfSe	11	449	April 1, 2023
Failed Data Upload LEfSe	4	173	April 1, 2023
The label in Cladogram is not centered LEfSe	0	57	March 30, 2023
Maaslin2 significant results MaAsLin	7	680	March 22, 2023
Trying to understand coef column (and how to convert it to fold change) MaAsLin	13	1123	March 17, 2023