About the Downstream analysis and statistics category
|
|
0
|
820
|
November 12, 2019
|
Different results with LEfSe on between Galaxy and Conda
|
|
3
|
265
|
November 18, 2024
|
Exporting Results/LDA scores to .tsv with conda?
|
|
3
|
195
|
November 18, 2024
|
LEfSe issues and errors
|
|
34
|
4434
|
November 17, 2024
|
Lefse_bug LDA run had a bug
|
|
2
|
118
|
November 12, 2024
|
How to use coef_plot_vars?
|
|
1
|
12
|
November 11, 2024
|
Different results with random effect from Maaslin2 vs Maaslin3
|
|
8
|
71
|
November 11, 2024
|
Maaslin3 undefined columns selected
|
|
1
|
25
|
November 11, 2024
|
Heatmap_first_n has no effect on output heatmap
|
|
2
|
18
|
November 11, 2024
|
Median_comparison_abundance: should it be TRUE or FALSE?
|
|
1
|
6
|
November 11, 2024
|
Bug in filtering by variance
|
|
1
|
17
|
November 11, 2024
|
Interaction term missing from Maaslin2 output
|
|
1
|
151
|
November 1, 2024
|
Shannon diversity: not normally distributed
|
|
1
|
79
|
November 1, 2024
|
The issue of comparing results after recalculating q-values in Maaslin2
|
|
1
|
68
|
November 1, 2024
|
Maaslin2 does not retrieve any figure nor significant result
|
|
2
|
19
|
October 30, 2024
|
Maaslin2 fails with random effects
|
|
3
|
47
|
October 28, 2024
|
R Session aborts when running Maaslin2
|
|
1
|
11
|
October 21, 2024
|
Does Maaslin2 support taxa as explanatory/independent variables?
|
|
4
|
27
|
October 21, 2024
|
MetaPhlAn3 output analysis with MaAsLin2
|
|
2
|
55
|
September 25, 2024
|
Error in when running lefse on Galaxy in step B (LDA effect size)
|
|
0
|
47
|
September 11, 2024
|
Number of figures in output
|
|
1
|
31
|
September 10, 2024
|
Extract processed data from MaAsLin2
|
|
4
|
579
|
September 6, 2024
|
Controlling for nested matched controls
|
|
1
|
33
|
September 3, 2024
|
Question about a strange result
|
|
2
|
47
|
August 21, 2024
|
Maaslin2 handling of covariates
|
|
7
|
3147
|
August 17, 2024
|
TSS normalization LOG transformation impact on relative abundance data
|
|
1
|
73
|
August 14, 2024
|
Number of significantly discriminative features: 311 ( 311 ) before internal wilcoxon
|
|
0
|
49
|
August 14, 2024
|
Number of significantly discriminative features: 8 ( 131 ) before internal wilcoxon
|
|
1
|
106
|
August 13, 2024
|
Results have variable name as value
|
|
6
|
52
|
August 12, 2024
|
Nested Random Effects in MaAsLin
|
|
5
|
394
|
August 10, 2024
|