Downstream analysis and statistics

microPITA Name: microPITA User manual || Tutorial ARepA Name: ARepA User manual || Tutorial MaAsLin Name: MaAsLin2 User manual || Tutorial CCREPE Name: CCREPE User manual || Tutorial SparseDOSSA Name: SparseDOSSA User manual || Tutorial HAllA Name: HAllA User manual || Tutorial MMUPHin Name: MMUPHin User manual || Tutorial BAnOCC Name: BAnOCC User manual || Tutorial LEfSe Name: LEfSe User manual || Tutorial

Topic	Replies	Views	Activity
About the Downstream analysis and statistics category Downstream analysis and statistics	0	141	November 12, 2019
No differential features after Lefse LEfSe	0	5	March 4, 2021
LEfSe input file question LEfSe	13	729	February 24, 2021
Simulating datasets for analyzing microbial co-occurence network Tools SparseDOSSA	2	52	February 22, 2021
Negative values in y-axis bar plots_MaAsLIn MaAsLin	1	13	February 20, 2021
Syntax errors - program code HAllA	11	50	February 18, 2021
MaAsLin2 and microbiota development over time MaAsLin	5	53	February 12, 2021
Metaphlan3 analysis with Maaslin2 MaAsLin	3	36	February 11, 2021
LEfSe output table & pvalue LEfSe	1	42	February 10, 2021
Adjusting for covariates in HAllA HAllA	9	49	February 9, 2021
LEfSe analyses in the Galaxy LEfSe	3	160	February 5, 2021
One of the top species in LDA is missing in cladogram LEfSe	2	23	February 4, 2021
Extra information study “Structure of the Mucosal and Stool Microbiome in Lynch Syndrome” Downstream analysis and statistics	3	72	February 4, 2021
RNA and DNA CPM as covariates MaAsLin	7	75	February 3, 2021
Error running Maaslin2 about input MaAsLin	3	42	February 2, 2021
Using MaAsLin2 for testing microbiome predictive value MaAsLin	5	68	January 29, 2021
Log transformation pseudo-count MaAsLin	1	45	January 29, 2021
Error on Format Data for LEfSe LEfSe	4	52	January 26, 2021
Unable to format data for LEfSe LEfSe	3	46	January 25, 2021
LefSe error message on galaxy LEfSe	4	135	January 22, 2021
Interaction effects in lefse 2 between subject factors LEfSe	2	46	January 22, 2021
B) LDA Effect Size(LEfSe) error ! please help me! LEfSe	1	47	January 21, 2021
Application of LEfSe for NGS microRNA data LEfSe	2	50	January 19, 2021
Number of features before and after wilcoxon subclass test LEfSe	1	82	January 15, 2021
Masslin2 runs forever for 530 K associations MaAsLin	6	69	January 14, 2021
Longitudinal data in Lefse LEfSe	3	68	January 12, 2021
How to stop the numbers on heatmap using HAllA HAllA	2	78	January 11, 2021
Maaslin2 model validation MaAsLin	5	152	January 11, 2021
Understanding output SparseDOSSA	5	72	January 11, 2021
Error running Maaslin2 MaAsLin	5	484	January 8, 2021