About the Downstream analysis and statistics category
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0
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826
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November 12, 2019
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MaAsLin3 with estimated microbial load
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6
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24
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December 21, 2024
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Regarding Maaslin2, an error occurred during the running process: Error in initializePtr() : The package 'cholmod_factor_ldetA' does not provide a function like 'Matrix'
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4
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11
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December 20, 2024
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N.not.0 column issues with CLR data
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8
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466
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December 20, 2024
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Including random effect causes R session to abort
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1
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15
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December 19, 2024
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Questions about the parameter unit
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1
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12
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December 18, 2024
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MaAsLin2 CLR transformation differing results
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1
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18
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December 18, 2024
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"Error in if (x == y) x else gsub(x, "", y) : missing value where TRUE/FALSE needed" with Maaslin2 analysis
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1
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10
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December 18, 2024
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LEfSe issues and errors
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36
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4497
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December 17, 2024
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Different results running GLM and Maaslin2 using same methods/transformations
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6
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2184
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December 12, 2024
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Installing Maaslin2 from Bioconductor
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4
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791
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December 9, 2024
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Maaslin2 (v1.12.0) issue with metadata catagories
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2
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20
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November 28, 2024
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Print all groups that satisfy the p-value cutoff in .res file (not just top lda group)
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0
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5
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November 27, 2024
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MaAsLin3 _ NA in heatmap plot
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1
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23
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November 27, 2024
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Using Maaslin2 for "effect removal"
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1
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26
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November 26, 2024
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MaAslin2 result differs from original expr and subsetted expr
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1
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22
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November 26, 2024
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Maaslin3 undefined columns selected
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2
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39
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November 26, 2024
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Different results with LEfSe on between Galaxy and Conda
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3
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278
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November 18, 2024
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Exporting Results/LDA scores to .tsv with conda?
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3
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198
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November 18, 2024
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Lefse_bug LDA run had a bug
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2
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123
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November 12, 2024
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How to use coef_plot_vars?
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1
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22
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November 11, 2024
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Different results with random effect from Maaslin2 vs Maaslin3
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8
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111
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November 11, 2024
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Heatmap_first_n has no effect on output heatmap
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2
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23
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November 11, 2024
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Median_comparison_abundance: should it be TRUE or FALSE?
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1
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13
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November 11, 2024
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Bug in filtering by variance
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1
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19
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November 11, 2024
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Interaction term missing from Maaslin2 output
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1
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154
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November 1, 2024
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Shannon diversity: not normally distributed
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1
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82
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November 1, 2024
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The issue of comparing results after recalculating q-values in Maaslin2
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1
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77
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November 1, 2024
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Maaslin2 does not retrieve any figure nor significant result
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2
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30
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October 30, 2024
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Maaslin2 fails with random effects
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3
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55
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October 28, 2024
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