About the Downstream analysis and statistics category
|
|
0
|
838
|
November 12, 2019
|
LEfSe issues and errors
|
|
37
|
4585
|
February 7, 2025
|
Need Help with Galaxy LEfSe LDA Step Error
|
|
0
|
2
|
February 7, 2025
|
Maaslin3 significant feature not shown in summary plot
|
|
3
|
20
|
February 4, 2025
|
MaAsLin3 total abundance scaling with basic 16S qPCR
|
|
0
|
4
|
February 4, 2025
|
MTXmodel normalisation on dna data
|
|
1
|
5
|
February 3, 2025
|
Ccrepe output in one row
|
|
0
|
4
|
January 31, 2025
|
Is normalization applied before or after filtering in maaslin3?
|
|
1
|
13
|
January 30, 2025
|
How to include other subclades/taxa in the resulting plot?
|
|
0
|
12
|
January 29, 2025
|
Number of Reads Metagenomic Data for Maaslin3
|
|
5
|
15
|
January 28, 2025
|
How are fixed effect p-values calculated in MaAsLin2?
|
|
1
|
15
|
January 24, 2025
|
CLR normalisation ouput
|
|
7
|
328
|
January 23, 2025
|
How to use maaslin2
|
|
2
|
40
|
January 14, 2025
|
MaAsLin3 conda request
|
|
3
|
18
|
January 8, 2025
|
Including random effect causes R session to abort
|
|
6
|
46
|
January 7, 2025
|
Potential Bug in `maaslin3` with `input_metadata` Parameter
|
|
1
|
23
|
January 6, 2025
|
MaAsLin3 with estimated microbial load
|
|
8
|
75
|
December 24, 2024
|
Regarding Maaslin2, an error occurred during the running process: Error in initializePtr() : The package 'cholmod_factor_ldetA' does not provide a function like 'Matrix'
|
|
4
|
21
|
December 20, 2024
|
N.not.0 column issues with CLR data
|
|
8
|
482
|
December 20, 2024
|
Questions about the parameter unit
|
|
1
|
24
|
December 18, 2024
|
MaAsLin2 CLR transformation differing results
|
|
1
|
46
|
December 18, 2024
|
"Error in if (x == y) x else gsub(x, "", y) : missing value where TRUE/FALSE needed" with Maaslin2 analysis
|
|
1
|
16
|
December 18, 2024
|
Different results running GLM and Maaslin2 using same methods/transformations
|
|
6
|
2203
|
December 12, 2024
|
Installing Maaslin2 from Bioconductor
|
|
4
|
810
|
December 9, 2024
|
Maaslin2 (v1.12.0) issue with metadata catagories
|
|
2
|
24
|
November 28, 2024
|
Print all groups that satisfy the p-value cutoff in .res file (not just top lda group)
|
|
0
|
7
|
November 27, 2024
|
MaAsLin3 _ NA in heatmap plot
|
|
1
|
37
|
November 27, 2024
|
Using Maaslin2 for "effect removal"
|
|
1
|
31
|
November 26, 2024
|
MaAslin2 result differs from original expr and subsetted expr
|
|
1
|
24
|
November 26, 2024
|
Maaslin3 undefined columns selected
|
|
2
|
44
|
November 26, 2024
|