Downstream analysis and statistics

microPITA Name: microPITA User manual || Tutorial ARepA Name: ARepA User manual || Tutorial CCREPE Name: CCREPE User manual || Tutorial SparseDOSSA Name: SparseDOSSA User manual || Tutorial MaAsLin Name: MaAsLin2 User manual || Tutorial MMUPHin Name: MMUPHin User manual || Tutorial BAnOCC Name: BAnOCC User manual || Tutorial HAllA Name: HAllA User manual || Tutorial LEfSe Name: LEfSe User manual || Tutorial

Topic	Replies	Views	Activity
About the Downstream analysis and statistics category Downstream analysis and statistics	0	129	November 12, 2019
RNA and DNA CPM as covariates MaAsLin	0	4	January 27, 2021
Using MaAsLin2 for testing microbiome predictive value MaAsLin	4	36	January 27, 2021
Syntax errors - program code HAllA	1	3	January 27, 2021
Extra information study “Structure of the Mucosal and Stool Microbiome in Lynch Syndrome” Downstream analysis and statistics	2	48	January 26, 2021
Error on Format Data for LEfSe LEfSe	4	20	January 26, 2021
Unable to format data for LEfSe LEfSe	3	20	January 25, 2021
Adjusting for covariates in HAllA HAllA	1	13	January 25, 2021
LefSe error message on galaxy LEfSe	4	87	January 22, 2021
Interaction effects in lefse 2 between subject factors LEfSe	2	27	January 22, 2021
B) LDA Effect Size(LEfSe) error ! please help me! LEfSe	1	24	January 21, 2021
Application of LEfSe for NGS microRNA data LEfSe	2	23	January 19, 2021
Number of features before and after wilcoxon subclass test LEfSe	1	46	January 15, 2021
Masslin2 runs forever for 530 K associations MaAsLin	6	44	January 14, 2021
Longitudinal data in Lefse LEfSe	3	39	January 12, 2021
How to stop the numbers on heatmap using HAllA HAllA	2	67	January 11, 2021
Maaslin2 model validation MaAsLin	5	114	January 11, 2021
Understanding a LefSe plot LEfSe	1	91	January 11, 2021
Understanding output SparseDOSSA	5	59	January 11, 2021
Error running Maaslin2 MaAsLin	5	419	January 8, 2021
Can I reduces the default LefSe LDA score? At least how much LDA cut off should I consider to consider? LEfSe	0	25	January 8, 2021
Decomposition method not available in recent halla versions? HAllA	2	83	December 21, 2020
Plotting Hallagram with big datasets HAllA	1	64	December 21, 2020
Simulating datasets for analyzing microbial co-occurence network Tools SparseDOSSA	1	40	December 19, 2020
Maaslin2 with presence/absence data MaAsLin	1	51	December 17, 2020
Maaslin2 heatmap MaAsLin	1	54	December 17, 2020
Different results running GLM and Maaslin2 using same methods/transformations MaAsLin	4	135	December 17, 2020
OTUs as a unique code or enter them as a taxonomic hierarchy LEfSe	1	53	December 9, 2020
Paired samples by ID MaAsLin	5	69	December 7, 2020
LEfSe in galaxy inaccessible LEfSe	6	93	December 7, 2020