Downstream analysis and statistics

anpan MaAsLin Name: MaAsLin2 User manual || Tutorial PARATHAA Name: PARATHAA User manual || Tutorial ARepA Name: ARepA User manual || Tutorial microPITA Name: microPITA User manual || Tutorial SparseDOSSA Name: SparseDOSSA User manual || Tutorial CCREPE Name: CCREPE User manual || Tutorial LEfSe Name: LEfSe User manual || Tutorial BAnOCC Name: BAnOCC User manual || Tutorial HAllA Name: HAllA User manual || Tutorial MMUPHin Name: MMUPHin User manual || Tutorial

Topic	Replies	Views	Activity
About the Downstream analysis and statistics category Downstream analysis and statistics	0	636	November 12, 2019
LEfSe not showing the comparator group LEfSe	0	10	November 30, 2023
Lefse galaxy and conda codes LEfSe	2	176	November 30, 2023
Normalization with lots of unmapped humann reads MaAsLin	1	25	November 28, 2023
MaAsLin2 pathway data variable names too large MaAsLin	2	76	November 22, 2023
Maaslin2 not recognizing reference group MaAsLin	0	25	November 21, 2023
R session aborted when running random_effect MaAsLin	2	57	November 21, 2023
Warning non-integer counts, ZINB and TMM MaAsLin	2	63	November 21, 2023
Does MaAsLin2 have MIT License? MaAsLin	1	45	November 15, 2023
Lefse plot advance graphical options LEfSe	0	33	November 13, 2023
Unable to access the Galaxy module of lefse LEfSe	14	1003	November 9, 2023
No taxa labels after lefse_plot_cladogram.py LEfSe	1	199	November 9, 2023
Maaslin2 q value calculation MaAsLin	2	89	November 8, 2023
rCLR transformation MaAsLin	2	64	November 6, 2023
Trying to understand coef column (and how to convert it to fold change) MaAsLin	14	2006	November 5, 2023
Galaxy/Hutlab website issue LEfSe	1	181	November 5, 2023
Xtfrm error with Maaslin2 default example in R MaAsLin	17	829	November 3, 2023
Error in Format Data for LEfSe LEfSe	10	386	November 1, 2023
Maaslin2 all-groups outcome different from paired-groups MaAsLin	2	99	November 2, 2023
Maaslin2 handling of covariates MaAsLin	5	2111	November 2, 2023
Lefse - error in format file LEfSe	3	99	November 1, 2023
The label in Cladogram is not centered LEfSe	1	256	November 1, 2023
Maaslin2 correlation plot doesn't match data MaAsLin	1	79	November 1, 2023
MaAsLin2 and model.matrix variables MaAsLin	1	110	October 30, 2023
LEfSe Module B error LEfSe	0	66	October 27, 2023
LEfSe issues and errors LEfSe	20	1360	October 27, 2023
No access to online LefSe LEfSe	7	616	October 25, 2023
MaAsLin 2 for longitudinal analysis with different individuals MaAsLin	6	286	October 25, 2023
Maaslin2 heatmap and significance_results table MaAsLin	2	120	October 25, 2023
Alternative ways to illustrate results MaAsLin	1	131	October 24, 2023