|
CLR transformation plots/model
|
|
1
|
79
|
March 1, 2024
|
|
Does a negative LDA score mean the abundance is less?
|
|
0
|
99
|
March 1, 2024
|
|
Error in Maaslin2(input_data = input_data, input_metadata = input_metadata, : Please provide the reference for the variable 'diagnosis' which includes more than 2 levels: UC, CD, nonIBD
|
|
4
|
2452
|
February 23, 2024
|
|
Formatting data for LEfSe
|
|
2
|
179
|
February 20, 2024
|
|
Request for Assistance: LEfSe Module File Upload Issue
|
|
2
|
132
|
February 19, 2024
|
|
Type I vs. Type III Sums of Squares
|
|
1
|
106
|
February 16, 2024
|
|
Problem using LEfSe on Galaxy - can't format data for LEfSe
|
|
6
|
1878
|
February 13, 2024
|
|
MMUPHin lm_meta: Questions regarding warning messages and forest plot generate
|
|
0
|
80
|
February 6, 2024
|
|
Using MaAsLin2 longitudinal data model to associate microbiome feature at one time point and phenotype in next time point
|
|
0
|
61
|
February 11, 2024
|
|
LEfSe for humann3
|
|
1
|
78
|
February 12, 2024
|
|
ERROR::No fixed effects included in formula
|
|
4
|
188
|
February 9, 2024
|
|
Model selection
|
|
0
|
71
|
February 8, 2024
|
|
Handling 3-way interactions
|
|
6
|
584
|
February 8, 2024
|
|
Nested factors in MaAsLin2
|
|
1
|
99
|
February 5, 2024
|
|
Fitting problem, returning NA
|
|
3
|
162
|
February 5, 2024
|
|
How to use LEfSe locally with conda?
|
|
6
|
1695
|
January 29, 2024
|
|
Variance-Covariance matrix
|
|
1
|
92
|
January 26, 2024
|
|
Results change based on reference?
|
|
1
|
117
|
January 26, 2024
|
|
Lefse or Deseq analysis?
|
|
1
|
181
|
January 22, 2024
|
|
Lefse analysis in R and result showed nothing
|
|
2
|
346
|
January 22, 2024
|
|
No taxa labels after lefse_plot_cladogram.py
|
|
2
|
407
|
January 16, 2024
|
|
TSS normalization of normalized metabolomics data
|
|
1
|
154
|
January 10, 2024
|
|
Exporting Results/LDA scores to .tsv with conda?
|
|
1
|
127
|
January 8, 2024
|
|
Using Maaslin2 function to regress out the effect of subject
|
|
2
|
141
|
January 8, 2024
|
|
LEfSe for two groups and no subclasses
|
|
0
|
108
|
January 8, 2024
|
|
Interpretation of effect sizes
|
|
1
|
155
|
January 5, 2024
|
|
CLR normalisation ouput
|
|
5
|
210
|
January 5, 2024
|
|
Error running MaAsLin2 about ID names
|
|
3
|
182
|
January 4, 2024
|
|
Maaslin2 handling of covariates
|
|
6
|
2643
|
December 22, 2023
|
|
Maaslin2 correlation plot doesn't match data
|
|
3
|
236
|
December 21, 2023
|