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How does Maaslin deal with zeros?
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4
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221
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January 24, 2023
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MaAslin2 Interactions with Gender and Trial
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4
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292
|
January 19, 2023
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Maaslin not the same results as spearman!
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1
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114
|
January 18, 2023
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Random effects of cohort/round
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1
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82
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January 16, 2023
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Inputting hierarchy-split counts
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4
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110
|
January 10, 2023
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Global test statistic in addition to feature-metadata pairs?
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1
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96
|
January 9, 2023
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Metacyc pathway and Species
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1
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84
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January 6, 2023
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How to choose the results found by different model and transformation/normalization methods?
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1
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148
|
January 3, 2023
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Setting stepwise reference
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1
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92
|
January 3, 2023
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Q-values in Maaslin2
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1
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228
|
January 3, 2023
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Q-value threshold for significance
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2
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175
|
January 2, 2023
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Lefse Input file for functional data-TPM or raw counts?
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1
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107
|
December 20, 2022
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How to install the pypi version of LEfSe
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1
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218
|
December 20, 2022
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Maaslin.tar.gz - newest version?
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1
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92
|
December 15, 2022
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How to handle biological replicates with LEfSe
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0
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132
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October 5, 2022
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Confusion over factors of the "value" column in significant_results.tsv
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2
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109
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December 15, 2022
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Order of operations? Prev then normalisation or normalisation then prev?
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1
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66
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December 14, 2022
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Maaslin2 vs MMUPHin
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4
|
236
|
December 7, 2022
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Sample filter after min_prevalence
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1
|
93
|
December 6, 2022
|
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LEfSe sample data
|
|
1
|
103
|
November 28, 2022
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LefSe's example input file
|
|
6
|
2567
|
November 26, 2022
|
|
HAllA no FDR adjustment
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|
7
|
123
|
November 22, 2022
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Lefse_run.py error
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0
|
152
|
November 22, 2022
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LDA Lefse error : 2nd step
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2
|
119
|
November 21, 2022
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Effect size in multiple groups comparison
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0
|
110
|
November 21, 2022
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Lefse pairwise testing?
|
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0
|
108
|
November 20, 2022
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|
SparseDOSSA2 correlation structure
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|
7
|
385
|
November 17, 2022
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|
LEfSe results show taxonomy but not sample ID
|
|
0
|
99
|
November 15, 2022
|
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Warning messages running 'lefse_run.py'
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|
1
|
114
|
November 14, 2022
|
|
Questions about normalization method CLR vs TSS
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4
|
684
|
November 11, 2022
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