Maaslin2 "coef" interpretation

Downstream analysis and statistics MaAsLin
1

Hello,

I am using Maaslin2 for microbiome data using following options:

normalization = “TSS”,
analysis_method = “LM”,
transform = “LOG”

In the output file what is the meaning of “coef”? Does it mean “log2 fold change” compared to reference variable? If not, how to convert the “coef” in “log2foldchange”?

Thanks!

2

Yes, exactly - it is log 2 fold change.

Will

1 Like
3

Thank you for replying !