This is my first time using Galaxy LEfSe, and I appear to be having difficulty trying to run my data set. The first few participant data points are
| Sample_ID | DOM00003 | DOM00004 | DOM00006 |
|---|---|---|---|
| HIV_Status | HI | HI | HI |
| CD4_Count | >=500 | <500 | >=500 |
| Plasma_IFN_gamma | 0.0086 | 1.122544 | 0.0086 |
| Plasma_IL1_alpha | 0.682145 | 1.01536 | 0.0086 |
| Plasma_IL1_beta | 0.973128 | 0.987666 | 0.0086 |
| Plasma_IL2 | 0.367356 | 0.0086 | 0.0086 |
| Plasma_IL4 | 0.572872 | 0.744293 | 0.0086 |
| Plasma_IL5 | 0.519828 | 1.117934 | 0.896526 |
| Plasma_IL6 | 0.0086 | 0.225309 | 0.595496 |
| Plasma_IL8 | 0.240549 | 0.570543 | 0.0086 |
| Plasma_IL10 | 0.640481 | 0.744293 | 1.175222 |
| Plasma_MCP1 | 1.714665 | 1.894094 | 2.238448 |
| Plasma_TNF_alpha | 1.271377 | 1.335859 | 1.579326 |
and I am getting the following error:
Traceback (most recent call last):
File “/galaxy_venv/bin/lefse_format_input.py”, line 33, in
sys.exit(load_entry_point(‘lefse==1.1.2’, ‘console_scripts’, ‘lefse_format_input.py’)())
File “/galaxy_venv/bin/lefse_format_input.py”, line 25
I am not sure what I am doing wrong