|
[e] both db_dna and db_aa are None!
|
|
0
|
179
|
March 27, 2024
|
|
PhyloPhlAn: using a manually downloaded database
|
|
18
|
2553
|
February 10, 2024
|
|
Error when tried MSA with MUSCLE
|
|
1
|
288
|
February 10, 2024
|
|
How to interpret phylophlan_strain_finder result
|
|
1
|
253
|
February 10, 2024
|
|
Phylophlan Tree of life
|
|
1
|
249
|
February 10, 2024
|
|
All bins identified as the same
|
|
0
|
240
|
September 27, 2023
|
|
Phylophlan Nucleotide Database for marker genes
|
|
0
|
187
|
September 18, 2023
|
|
Issues with Muscle 5 compatibility
|
|
0
|
212
|
September 8, 2023
|
|
Unrooted Tree Splitting Species
|
|
0
|
143
|
September 6, 2023
|
|
PhyloPhlAn3: muscle returned non-zero exit status 1
|
|
1
|
365
|
August 28, 2023
|
|
Optimize run time in Phylophlan3
|
|
2
|
750
|
August 28, 2023
|
|
Can I specify which reference genomes to download in PhyloPhlAn?
|
|
1
|
350
|
August 28, 2023
|
|
Wrong assignment of Phylogeny
|
|
4
|
358
|
May 18, 2023
|
|
Error running raxml on S.Aureus tutorial data
|
|
1
|
653
|
May 18, 2023
|
|
Speeding up PhyloPhlAn (RAxML-HPC step)
|
|
3
|
1019
|
May 18, 2023
|
|
Unable to run PhyloPhlan without trimming the msa
|
|
0
|
272
|
May 15, 2023
|
|
Unable to download proteins
|
|
6
|
900
|
May 12, 2023
|
|
UnicodeDecodeError when run PhyloPhlan3
|
|
0
|
441
|
April 28, 2023
|
|
Phylophlan3: confusing CLI help docs
|
|
3
|
314
|
April 3, 2023
|
|
Phylophlan_write_config_file: threads parameter
|
|
3
|
458
|
March 29, 2023
|
|
No inputs found error
|
|
1
|
320
|
March 28, 2023
|
|
Phylophlan3 not creating markers for all input genomes
|
|
1
|
374
|
March 28, 2023
|
|
Phylophlan error after generating the concatenated alignment
|
|
1
|
330
|
March 20, 2023
|
|
FileNotFoundError/FileExistsError. Either way if I have the file in question present or not
|
|
0
|
355
|
March 1, 2023
|
|
Building Phylogenetic Tree - [e] gene_markers_selection crashed
|
|
2
|
330
|
January 17, 2023
|
|
Phylophlan is always running with nothing returned
|
|
2
|
576
|
January 10, 2023
|
|
High resolution analysis reference genome download
|
|
1
|
326
|
January 10, 2023
|
|
Inputting data into phylophlan_metagenomic
|
|
1
|
392
|
January 10, 2023
|
|
Diversity --high and --low parameter
|
|
1
|
451
|
November 18, 2022
|
|
Running time during mapping with diamond
|
|
1
|
756
|
November 18, 2022
|