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Can I specify which reference genomes to download in PhyloPhlAn?
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1
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324
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August 28, 2023
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Wrong assignment of Phylogeny
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4
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322
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May 18, 2023
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Error running raxml on S.Aureus tutorial data
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1
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610
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May 18, 2023
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Speeding up PhyloPhlAn (RAxML-HPC step)
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3
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939
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May 18, 2023
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Unable to run PhyloPhlan without trimming the msa
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0
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252
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May 15, 2023
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Unable to download proteins
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6
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824
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May 12, 2023
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UnicodeDecodeError when run PhyloPhlan3
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0
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427
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April 28, 2023
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Phylophlan3: confusing CLI help docs
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3
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265
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April 3, 2023
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Phylophlan_write_config_file: threads parameter
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3
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406
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March 29, 2023
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No inputs found error
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1
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286
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March 28, 2023
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Phylophlan3 not creating markers for all input genomes
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1
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305
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March 28, 2023
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[e] No alignments found to concatenate
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3
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569
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March 28, 2023
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Phylophlan error after generating the concatenated alignment
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1
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296
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March 20, 2023
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FileNotFoundError/FileExistsError. Either way if I have the file in question present or not
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0
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345
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March 1, 2023
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Building Phylogenetic Tree - [e] gene_markers_selection crashed
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2
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299
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January 17, 2023
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Phylophlan is always running with nothing returned
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2
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548
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January 10, 2023
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High resolution analysis reference genome download
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1
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306
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January 10, 2023
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Inputting data into phylophlan_metagenomic
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1
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375
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January 10, 2023
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Diversity --high and --low parameter
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1
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415
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November 18, 2022
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Running time during mapping with diamond
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1
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703
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November 18, 2022
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File "/home/wakisa/miniconda3/envs/phylophlan/lib/python3.10/site-packages/scipy/spatial/distance.py", line 2555, in num_obs_y raise ValueError("The number of observations cannot be determined on " ValueError: The number of observations cannot be dete
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3
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273
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November 18, 2022
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Nothing happens after building phylogeny
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1
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334
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October 13, 2022
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No taxonomy in phylogenetic tree generated by phylophlan
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3
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505
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October 12, 2022
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Phylophlan is running too slow when mapping DNA
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3
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671
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October 12, 2022
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PhyloPhlAn cannot use ASTRID for --tree1
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1
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264
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September 15, 2022
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Get all reference error
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1
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328
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September 2, 2022
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Is there a way to use phylophlan_metagenomic with the phylophlan database?
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3
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934
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September 2, 2022
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Phylophlan running in loop
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1
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287
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August 26, 2022
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Speeding up PhylophlAn
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1
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419
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June 30, 2022
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Clades missing in phylogenetic tree
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5
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322
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May 31, 2022
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