|
Prokaryotic tree reconstruction pipeline issue
|
|
5
|
547
|
August 9, 2021
|
|
Error while executing raxmlHPC-PTHREADS-SSE3
|
|
4
|
791
|
July 22, 2021
|
|
Phylophan and Binned fasta
|
|
9
|
981
|
July 7, 2021
|
|
Using multiple cores with Mac
|
|
1
|
310
|
June 23, 2021
|
|
Phylophlan_metagenomic: unable to download databases
|
|
1
|
498
|
June 15, 2021
|
|
Unable to create the tree of life: IsADirectoryError: [Errno 21] Is a directory: '/home/ubuntu/phylophlan/PhyloPhlAn.egg-info'
|
|
2
|
1664
|
June 3, 2021
|
|
Metagenomic - little confused
|
|
7
|
571
|
June 2, 2021
|
|
Utterly confused - PhloPhlAn 2 -> PhyloPhlAn 3 - how to characterise MAGs
|
|
2
|
777
|
June 2, 2021
|
|
Phylophlan_metagenomic crashed
|
|
3
|
551
|
May 10, 2021
|
|
PhyloPhlAn 3 - E coli input produces "[e] No alignments found to concatenate"
|
|
2
|
895
|
April 20, 2021
|
|
Is there some database update than "taxa2core_cpa201901_up201901.txt.bz2"?
|
|
1
|
297
|
April 12, 2021
|
|
raxmlHPC failed: [e] refine_gene_tree crashed
|
|
10
|
1013
|
January 26, 2021
|
|
Explanation of the output of phylophlan_metagenomic
|
|
2
|
862
|
January 21, 2021
|
|
Pre-downloading PhyloPhlAn databases?
|
|
1
|
716
|
January 21, 2021
|
|
Error running FastTreeMP step
|
|
5
|
984
|
January 21, 2021
|
|
PhyloPhlAn Crash-------
|
|
2
|
1151
|
January 20, 2021
|
|
Quantifying uncertainty the level of uncertainty in phylophlan_metagenomic
|
|
2
|
425
|
January 14, 2021
|
|
Supermatrix alignment has varying length -> error in tree build
|
|
2
|
665
|
January 8, 2021
|
|
Isolates_config.cfg from S aureus example in tutorial
|
|
2
|
318
|
December 9, 2020
|
|
UnboundLocalError: local variable 'input_faa_clean' referenced before assignment
|
|
2
|
1544
|
December 8, 2020
|
|
How many markers included in Phylophlan concatenated alignment?
|
|
1
|
778
|
October 2, 2020
|
|
Phylophlan v3, which usearch version needed?
|
|
2
|
391
|
October 2, 2020
|
|
This sequence may be truncated, or another sequence may be too long?
|
|
9
|
2664
|
September 11, 2020
|
|
Tree rooting with PhyloPhlan
|
|
2
|
1080
|
August 12, 2020
|
|
PhyloPhlAn database
|
|
2
|
1069
|
July 22, 2020
|
|
Configuration file error
|
|
1
|
997
|
June 29, 2020
|
|
PhyloPhlAn for partial sequence
|
|
1
|
404
|
June 1, 2020
|
|
Strainphlan_config & line 655 TypeError
|
|
2
|
1198
|
June 1, 2020
|
|
Phylophlan version - installing from conda
|
|
7
|
1421
|
May 18, 2020
|
|
Manual link directs to Humann2
|
|
1
|
402
|
May 13, 2020
|