|
What are the limitations for number of input sequences?
|
|
6
|
402
|
May 16, 2022
|
|
How to draw a beautiful evolutionary tree
|
|
3
|
862
|
April 8, 2022
|
|
Issue with getting reference genomes
|
|
4
|
361
|
April 2, 2022
|
|
Issues with downloading some reference genomes
|
|
1
|
278
|
March 25, 2022
|
|
Build phylogenetic tree from a database
|
|
1
|
406
|
March 17, 2022
|
|
Various PhyloPhlAn 3.0 Errors for Nucleotide MAGs and Genomes
|
|
3
|
726
|
February 23, 2022
|
|
Phylophlan Tree of Life Differences
|
|
2
|
665
|
January 12, 2022
|
|
Phylophlan - creating database of markers
|
|
9
|
1153
|
November 26, 2021
|
|
Database Download Error
|
|
2
|
683
|
November 10, 2021
|
|
Phylophlan3 database in phylophlan command
|
|
5
|
636
|
September 29, 2021
|
|
Just installed PhyloPhlAn 3.0.06, missing the tutorial folder
|
|
2
|
445
|
September 29, 2021
|
|
PhyloPhlAn: Not enought markers
|
|
1
|
614
|
August 30, 2021
|
|
Error on iqtree step
|
|
6
|
2058
|
August 13, 2021
|
|
Prokaryotic tree reconstruction pipeline issue
|
|
5
|
588
|
August 9, 2021
|
|
Error while executing raxmlHPC-PTHREADS-SSE3
|
|
4
|
873
|
July 22, 2021
|
|
Phylophan and Binned fasta
|
|
9
|
1138
|
July 7, 2021
|
|
Using multiple cores with Mac
|
|
1
|
334
|
June 23, 2021
|
|
Phylophlan_metagenomic: unable to download databases
|
|
1
|
552
|
June 15, 2021
|
|
Unable to create the tree of life: IsADirectoryError: [Errno 21] Is a directory: '/home/ubuntu/phylophlan/PhyloPhlAn.egg-info'
|
|
2
|
1715
|
June 3, 2021
|
|
Metagenomic - little confused
|
|
7
|
661
|
June 2, 2021
|
|
Utterly confused - PhloPhlAn 2 -> PhyloPhlAn 3 - how to characterise MAGs
|
|
2
|
840
|
June 2, 2021
|
|
Phylophlan_metagenomic crashed
|
|
3
|
582
|
May 10, 2021
|
|
PhyloPhlAn 3 - E coli input produces "[e] No alignments found to concatenate"
|
|
2
|
977
|
April 20, 2021
|
|
Is there some database update than "taxa2core_cpa201901_up201901.txt.bz2"?
|
|
1
|
316
|
April 12, 2021
|
|
raxmlHPC failed: [e] refine_gene_tree crashed
|
|
10
|
1241
|
January 26, 2021
|
|
Pre-downloading PhyloPhlAn databases?
|
|
1
|
816
|
January 21, 2021
|
|
Error running FastTreeMP step
|
|
5
|
1089
|
January 21, 2021
|
|
PhyloPhlAn Crash-------
|
|
2
|
1250
|
January 20, 2021
|
|
Quantifying uncertainty the level of uncertainty in phylophlan_metagenomic
|
|
2
|
461
|
January 14, 2021
|
|
Supermatrix alignment has varying length -> error in tree build
|
|
2
|
843
|
January 8, 2021
|