Dear Francesco
When I run example2 ,I get data result file input_genomes.tre.treefile
Then I want to visual this tree, How can I find the phylum annotation about GCA_* files?
less input_genomes
GCA_001823915.fna.gz
GCA_002773335.fna.gz
GCA_000520875.fna.gz
GCA_001567325.fna.gz
...
GCA_001823925.fna.gz
GCA_002773355.fna.gz
GCA_000521385.fna.gz
zcat GCA_*.fna.gz|grep ">"
give me the some info about species,
>CP019368.1 Borrelia turicatae 91E135 plasmid lpT39, complete sequence
>CP019369.1 Borrelia turicatae 91E135 plasmid lpU43, complete sequence
>CP000061.1 Aster yellows witches'-broom phytoplasma AYWB strain AY-WB chromosome, complete genome
>CP000062.1 Aster yellows witches'-broom phytoplasma AYWB strain AY-WB plasmid pAYWB-I, complete sequence
>CP000063.1 Aster yellows witches'-broom phytoplasma AYWB strain AY-WB plasmid pAYWB-II, complete sequence
>CP000064.1 Aster yellows witches'-broom phytoplasma AYWB strain AY-WB plasmid pAYWB-III, complete sequence
>CP000065.1 Aster yellows witches'-broom phytoplasma AYWB strain AY-WB plasmid pAYWB-IV, complete sequence
>CP000082.1 Psychrobacter arcticus 273-4, complete genome
>CP000096.1 Chlorobium luteolum DSM 273, complete genome
>CP000100.1 Synechococcus elongatus PCC 7942, complete genome
>CP000101.1 Synechococcus elongatus PCC 7942 plasmid 1, complete sequence
>CP000102.1 Methanosphaera stadtmanae DSM 3091, complete genome
>CP000109.2 Thiomicrospira crunogena XCL-2, complete genome
>CP000115.1 Nitrobacter winogradskyi Nb-255, complete genome
How can I map species to phylum like following?
GCA_001823915.fna.gz d__Bacteria.p__Acidobacteria.c__Acidobacteria.o__Acidobacte...
GCA_002773335.fna.gz d__Bacteria.p__Acidobacteria.c__Acidobacteria.o__Acidobacte...
Can you tell me how the following picture is drawn?
Looking forward to your answer
Chengkai