Phylophlan
To construct a tree with Phylophlan, I am including instructions to perform bootstrap analysis directly in the config file, and I am writing this:
[tree2]
program_name = /home/jesus/miniconda3/envs/phylo_env/bin/raxmlHPC-PTHREADS-SSE3
params = -p 1989 -m PROTCATLG -f a -# 100 -x 1989
database = -t
input = -s
output_path = -w
output = -n
version = -v
command_line = #program_name# #params# #threads# #database# #output_path# #input# #output#
threads = -T
The program tells me “error while executing” the previous commands. I will greatly appreciate if you could tell me what am I doing wrong Thanks a lot!