HUMAnN

Topic	Replies	Views	Activity
Announcing HUMAnN 3.7 Summary: HUMAnN 3.7 enables tiered search using MetaPhlAn 4’s recently updated marker database (October 2022 version) and the bioBakery 3.1 pangenome catalog. What has changed in HUMAnN 3.7: HUMAnN 3.7 maps MetaPhl…	3	1222	May 4, 2023
Should I first renorm gene_family to CPM and then regroup to pathway or on the contrary？	5	520	December 5, 2023
CRITICAL ERROR: The directory provided for ChocoPhlAn contains files that are not of the expected version	6	272	December 5, 2023
CRITICAL ERROR: The directory provided for the translated database contains files that are not of the expected version. Please install the latest version of the database: 201901b	2	157	December 5, 2023
Humann output normalized by Metaphlan output	0	22	December 1, 2023
Combine HUMAnN gene families file for MaAsLin	2	54	November 30, 2023
Diamond (v2.1.8) reported a fatal error when running humann (v3.8)	0	36	November 30, 2023
What is the best version of the HUMAnN tool?	1	36	November 29, 2023
No metaphlan_profile file was created	3	76	November 29, 2023
Humans database	3	40	November 29, 2023
HUMAnN filter out non-bacterial pathways and genes	1	64	November 29, 2023
Identical values of different RXN number (with the same gene family)	3	72	November 29, 2023
Query on Statistical Analysis Methods in HUMAnN3 Papers [DOI: 10.1038/s41564-018-0306-4]	2	28	November 29, 2023
Difficulty downloading databases in humann3	34	4413	November 20, 2023
Inquiry on custom chocophlan database	2	54	November 10, 2023
Problems with Eggnog renaming from grouped table	1	56	November 10, 2023
Humann3 creating many bowtie2 index files in the temp dir	1	95	November 10, 2023
HumanN 4 release date	8	894	November 10, 2023
A large number of "Taxon not in mapping file" appeared when analyzing the gut microbes of mice,	4	131	November 10, 2023
High proportion of Unmapped reads in metagenomic data	6	155	November 10, 2023
Cannot download Chocophlan database	12	546	November 10, 2023
Installing HUMAnN3 with conda	6	2255	November 7, 2023
Custom databases usage	4	481	October 26, 2023
Error Message from Diamond in humann v3.8	1	94	October 26, 2023
Photosynthetic pathways identified in human gut?	3	144	October 24, 2023
Tutorial for metatranscriptomic data accompanied with metagenomics data	3	174	October 20, 2023
Why are some HUMAnN features in [name]_pathabundance.tsv missing taxonomy?	1	103	October 20, 2023
UniRef90 to UniRef50 conversion using HUMAnN3.0	1	79	October 20, 2023
Humann3: Utility mapping databases unavailable	9	824	October 18, 2023
Error when running HUMAnN	5	198	October 10, 2023

Announcing HUMAnN 3.7

Summary: HUMAnN 3.7 enables tiered search using MetaPhlAn 4’s recently updated marker database (October 2022 version) and the bioBakery 3.1 pangenome catalog. What has changed in HUMAnN 3.7: HUMAnN 3.7 maps MetaPhl…