HUMAnN

Topic	Replies	Views	Activity
MetaPhlAn 4 + HUMAnN 4 compatibility HUMAnN users - I’m making a quick pinned post about MetaPhlAn 4 + HUMAnN 4 compatibility since we’re seeing a lot of posts raising similar issues. We will follow up with more detailed information in the short term, and l…	22	2104	March 27, 2026
Announcing HUMAnN 4.0 (alpha) Dear HUMAnN users: HUMAnN 4.0 (alpha) has arrived! Many thanks for your patience—we know there have been a lot of users looking forward to this release for a long time. Since a lot is changing in this version, we’re tryi…	3	3489	February 2, 2026
Pathcoverage vs Pathabundance for filtering - some numbers where I don't understand how they can happen	0	6	June 30, 2026
HUMAnN 4 database downloads inaccessible due to Globus (data.globus.org) domain blocking	4	117	June 23, 2026
HUMAnN v4.0.0.alpha.1 Raw Counts	3	63	June 22, 2026
How to get count data (not RPK)?	2	120	June 22, 2026
HUMAnN database download	26	2437	June 17, 2026
HUMAnN4 Support for MetaPhlAn vJan25 Database	2	197	June 4, 2026
Custom MetaPhlAn subspecies taxonomy + corresponding HUMAnN ChocoPhlAn pangenome design	2	33	May 28, 2026
Everything is unclassified	4	49	May 28, 2026
HUMAnN v4 alpha: clarification on 0.5x coverage threshold and low-abundance taxa filtering	1	36	May 22, 2026
Humann4 conda install from release note	1	67	May 14, 2026
What’s is needed to build a custom HUMANN database?	7	1094	April 29, 2026
Unable to download Databases	10	86	April 23, 2026
Metaphlan 4 using with Humann3.9	5	560	April 21, 2026
Can't download Uniref database	0	18	April 20, 2026
Humann_unpack_pathways command	5	251	April 15, 2026
Matching tools and database versions	8	179	April 9, 2026
Tutorial not up to date and unable to run successfully	0	51	April 5, 2026
No full uniref90 db in humann4	2	150	March 30, 2026
Humann 3.9 conda install will not work. Please update your version of MetaPhlAn?	6	390	March 9, 2026
Humann3 hanging during run, no error messages but no changes to output, log or temp files	21	1095	March 9, 2026
Very low mapping rate of Hummann v4alpha	3	148	March 6, 2026
Latest Stable version of HUMANn and MetaPhlAN for maximum downstream compatibility	0	194	March 3, 2026
Unable to download ChocoPhlAn and UniRef databases (connection error)	2	74	March 2, 2026
Best publication to referenec when citing humann4	0	38	February 26, 2026
Analyzing single end and paired end reads together?	0	17	February 20, 2026
Humann3 --metaphlan-options error	0	26	February 18, 2026
READS_UNMAPPED Is Not Presented in CPM Format	2	151	February 18, 2026
Dereplicating and normalizing reads for humann and metaphlan	6	122	January 30, 2026

MetaPhlAn 4 + HUMAnN 4 compatibility

HUMAnN users - I’m making a quick pinned post about MetaPhlAn 4 + HUMAnN 4 compatibility since we’re seeing a lot of posts raising similar issues. We will follow up with more detailed information in the short term, and l…

22

2104

March 27, 2026

Announcing HUMAnN 4.0 (alpha)

Dear HUMAnN users: HUMAnN 4.0 (alpha) has arrived! Many thanks for your patience—we know there have been a lot of users looking forward to this release for a long time. Since a lot is changing in this version, we’re tryi…