HUMAnN

Topic	Replies	Views	Activity
Announcing HUMAnN 4.0 (alpha) Dear HUMAnN users: HUMAnN 4.0 (alpha) has arrived! Many thanks for your patience—we know there have been a lot of users looking forward to this release for a long time. Since a lot is changing in this version, we’re tryi…	1	1222	October 30, 2024
Announcing HUMAnN 3.7 Summary: HUMAnN 3.7 enables tiered search using MetaPhlAn 4’s recently updated marker database (October 2022 version) and the bioBakery 3.1 pangenome catalog. What has changed in HUMAnN 3.7: HUMAnN 3.7 maps MetaPhl…	3	2434	May 4, 2023
Humans database	11	341	June 3, 2025
Unable to Download utility_mapping Full Database	0	6	June 3, 2025
Output Depends on Read Order Due to Ambiguous Protein Length Assignment in `blastx_coverage()`	2	16	June 1, 2025
HUMANn 4 + MetaPhlAn 4	0	20	May 30, 2025
Can I use the option --bowtie2out (for StrainPhlan!) along HUMANn?	3	34	May 29, 2025
Humann database errors (a short novel)	10	204	May 20, 2025
HUMAnN 3.9 fails when using '-t' flag with MetaPhlAn >4.0.6	0	13	May 19, 2025
Understanding RPK values	2	20	May 19, 2025
HUMAnN 3.9: Low percentage in “Selected species explain X% of predicted community composition”	2	8	May 19, 2025
Large percentage of unmapped pathways,	4	35	May 16, 2025
Humann 4.0 alpha in workflow	5	180	May 16, 2025
HUMAnN - RuntimeError: can't allocate lock	2	15	April 23, 2025
Humann3 without prior metaphlan run	4	44	April 21, 2025
Install and running Humann for the first time	2	27	April 18, 2025
What are typical unmapped and unintegrated fractions	1	20	April 11, 2025
Compatibility of uniref50 with HUMAnN4	1	16	April 11, 2025
Humann4 databases,full	1	75	April 11, 2025
Normalization method at HUMAnN4a output	2	41	April 11, 2025
Cannot download Chocophlan database	22	2139	April 11, 2025
Errors when running Humann 3.8	2	40	April 11, 2025
Conversion of HUMAnN taxonomy outputs to GTDB	1	32	April 11, 2025
Missing relative abundance and coverage error for humann4a	1	24	April 11, 2025
Run Humann on uniref90_201901 database	1	43	April 11, 2025
How do I find the metaphlan vOct22 chocophlan database for Humann?	4	124	April 6, 2025
MetaPhlAn no relative abundance hnn4	3	88	April 4, 2025
Functional categorization of pathways	2	58	March 8, 2025
Gene sequences fasta files for bowtie2 and diamond index	4	42	March 7, 2025
Unfiltered metacyc pathway mapping files	2	15	March 7, 2025

Announcing HUMAnN 4.0 (alpha)

Dear HUMAnN users: HUMAnN 4.0 (alpha) has arrived! Many thanks for your patience—we know there have been a lot of users looking forward to this release for a long time. Since a lot is changing in this version, we’re tryi…

1

1222

October 30, 2024

Announcing HUMAnN 3.7

Summary: HUMAnN 3.7 enables tiered search using MetaPhlAn 4’s recently updated marker database (October 2022 version) and the bioBakery 3.1 pangenome catalog. What has changed in HUMAnN 3.7: HUMAnN 3.7 maps MetaPhl…