HUMAnN

Topic	Replies	Views	Activity
Announcing HUMAnN 3.7 Summary: HUMAnN 3.7 enables tiered search using MetaPhlAn 4’s recently updated marker database (October 2022 version) and the bioBakery 3.1 pangenome catalog. What has changed in HUMAnN 3.7: HUMAnN 3.7 maps MetaPhl…	3	1816	May 4, 2023
No species found from stool.fasta file in HUMAnN tutorial	1	19	April 26, 2024
Metaphlan V4.0.2 and Huma 3.6: MetaPhlAn taxonomic profile provided was not generated with the expected database	32	3485	April 26, 2024
Help with understanding identifier mappings for HUMAnN?	1	45	April 26, 2024
CRITICAL: Can not find file sample_616_metaphlan_bugs_list.tsv	1	45	April 26, 2024
Cannot run humann v3.7 using the latest Chocophlan database	15	625	April 26, 2024
Humann with the latest version of metaphlan4	3	88	April 26, 2024
HumanN 4 release date	12	1661	April 24, 2024
CRITICAL ERROR: The directory provided for ChocoPhlAn contains files ( alaS.centroids.v201901_v31.ffn.gz ) that are not of the expected version	2	82	April 23, 2024
Bowtie2 Could not open bowtie2_aligned.sam	2	38	April 17, 2024
HUMAnN3 analysis not proceeding with RNAseq data	2	85	April 15, 2024
CRITICAL ERROR: The metaphlan executable can not be found. Please check the install	1	32	April 11, 2024
Way to identify virus in humann3 with metaphlan?	1	66	April 11, 2024
Metatranscriptomics of enriched cultures from a stool	1	56	April 11, 2024
Does Genefamilies, Pathabundance and pathcoverage work with split reads?	1	43	April 11, 2024
Most results from humann3 unclassified	1	57	April 11, 2024
EC numbers and bacteria	1	57	April 11, 2024
Humann databases need to be updated	0	54	April 8, 2024
HUMAnN database download	6	325	April 1, 2024
CRITICAL ERROR: The directory provided for ChocoPhlAn contains files that are not of the expected version	5	898	August 18, 2023
Inconsistent pathway stratification	4	177	March 11, 2024
Not able to upgrade HumanN to version 3.9	6	127	March 7, 2024
The genefamily file has results, but there are no functional enrichment results in the pathcoverage.tsv and pathabundance.tsv files	3	102	March 7, 2024
Using Kraken2 with Humann3	3	199	March 7, 2024
Unable to write to the HUMAnN config file in apptainer	0	49	March 7, 2024
Cannot download Chocophlan database	20	1264	March 6, 2024
Additional species show up in HUMAnN output	4	197	February 28, 2024
Take a big memory usage and less rate of CPUs in humann3	3	248	February 28, 2024
Request for Higher Taxonomic Level Analysis in HUMAnN	1	89	February 28, 2024
Humann error database version	1	343	June 28, 2022

Announcing HUMAnN 3.7

Summary: HUMAnN 3.7 enables tiered search using MetaPhlAn 4’s recently updated marker database (October 2022 version) and the bioBakery 3.1 pangenome catalog. What has changed in HUMAnN 3.7: HUMAnN 3.7 maps MetaPhl…