Microbial community profiling   HUMAnN


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Announcing HUMAnN 3.5

HUMAnN 3.5 Release Notes HUMAnN 3.5 provides compatibility between the newly released MetaPhlAn 4 taxonomic profiling system and the existing bioBakery 3 infrastructure. What has changed in HUMAnN 3.5: HUMAnN 3.5 ma…

1 456 August 24, 2022
Announcing MetaPhlAn 3.1 and HUMAnN 3.1

MetaPhlAn 3.1 / HUMAnN 3.1 Release Notes MetaPhlAn 3.1 and HUMAnN 3.1 represent a moderate update to the bioBakery 3 software and databases. This update is based on improvements in our ability to align NCBI-sourced micr…

1 591 July 27, 2022
About the Humann2 category
0 507 October 25, 2019
HUMAnN3.5 error with MetaPhlAn4
3 57 October 1, 2022
Should I first renorm gene_family to CPM and then regroup to pathway or on the contrary？
0 10 September 29, 2022
Outdated QIIME usage instructions - interested in an update?
1 12 September 29, 2022
Genefamilies, PathAbundance, PathCoverage
2 16 September 27, 2022
No MetaPhlAn BowTie2 database found (--index option)!
16 2206 September 27, 2022
MetaCyc hierarchy to invetigate/identify specific pathways
12 833 September 26, 2022
CRITICAL ERROR: The directory provided for ChocoPhlAn
4 1351 September 25, 2022
What is humann doing in the circled area?
2 29 September 24, 2022
About memory usage in HuManN 3.0.0.alpha.3
1 45 September 23, 2022
Humann3 run crashes with Unhandled exception in thread started by
5 65 September 13, 2022
ERROR: The MetaPhlAn2 taxonomic profile provided was not generated with the database version v30 . Please update your version of MetaPhlAn2 to v3.0
6 150 September 6, 2022
Error with Humann3 install- MinPath not installed correctly
0 30 September 2, 2022
Humann3 pathway issue
0 68 August 22, 2022
Reasonable number of pathways filtered away?
0 53 August 18, 2022
Error message returned from diamond
11 1127 August 4, 2022
Humann config as a command-line argument
0 58 August 4, 2022
Upgrading to more recent Uniref databases for Humann3
3 108 July 29, 2022
Get OTU table in humann output
14 138 July 29, 2022
Metacyc pwy regroup option missing?
5 74 July 29, 2022
Sharing the Uniref90 2019 fasta Sequence file used in Humann3
1 48 July 28, 2022
Script to sum abundance of pathway across taxa
1 67 July 28, 2022
Diamond UniRef90 database error
4 130 July 27, 2022
Update Diamond version for HUMAnN through pip
0 57 July 22, 2022
Error message returned from metaphlan when running humann3
0 52 July 17, 2022
About uniref90_v2019b
2 117 July 9, 2022
Diamond error with humann3
2 73 July 4, 2022
Humann in two steps
2 98 July 4, 2022