HUMAnN

Topic	Replies	Views	Activity
Announcing HUMAnN 4.0 (alpha) Dear HUMAnN users: HUMAnN 4.0 (alpha) has arrived! Many thanks for your patience—we know there have been a lot of users looking forward to this release for a long time. Since a lot is changing in this version, we’re tryi…	1	907	October 30, 2024
Announcing HUMAnN 3.7 Summary: HUMAnN 3.7 enables tiered search using MetaPhlAn 4’s recently updated marker database (October 2022 version) and the bioBakery 3.1 pangenome catalog. What has changed in HUMAnN 3.7: HUMAnN 3.7 maps MetaPhl…	3	2396	May 4, 2023
Errors when running Humann 3.8	1	10	March 24, 2025
Humans database	7	276	March 22, 2025
Humann 4.0 alpha in workflow	3	118	March 21, 2025
Conversion of HUMAnN taxonomy outputs to GTDB	0	4	March 21, 2025
Normalization method at HUMAnN4a output	0	15	March 18, 2025
Missing relative abundance and coverage error for humann4a	0	5	March 17, 2025
Run Humann on uniref90_201901 database	0	21	March 11, 2025
Functional categorization of pathways	2	26	March 8, 2025
Gene sequences fasta files for bowtie2 and diamond index	4	28	March 7, 2025
Unfiltered metacyc pathway mapping files	2	13	March 7, 2025
Humann database errors (a short novel)	1	42	March 7, 2025
Regrouping KOs to KEGG Modules	2	24	March 7, 2025
Running paired-end metagenome, only 3 result files were generated	1	14	March 7, 2025
Pyrhon version issue of HUMAnN4.0.0a	6	68	February 28, 2025
Duplicate-like Reaction Entries with Identical CPM Values in HUMAnN Output	4	12	February 19, 2025
HUMAnN database download	25	1122	February 13, 2025
Pathway abundance file only includes 9 species	1	22	February 13, 2025
Error with the examples files	1	26	February 13, 2025
Error running metaphlan and humann	2	62	February 13, 2025
HUMAnN: Unable to convert gene table value to float	1	9	February 13, 2025
Clarification on HUMAnN taxonomy assignment beyond MetaPhlAn	1	24	February 13, 2025
Humann results have some gene families not in map_uniref90_name.txt	1	10	February 13, 2025
Humann error with metaphlan	5	172	June 24, 2024
Humann4 fails identify protein from demo input	2	61	January 8, 2025
CRITICAL ERROR: Can not call software version for diamond	3	22	January 8, 2025
No pathways detected with --input-format genetable	2	20	January 8, 2025
MinPath12hmp.py:804 error humann3	6	60	January 5, 2025
Broken pipe with 48 threads and 98 Gb of RAM	2	37	January 5, 2025

Announcing HUMAnN 4.0 (alpha)

Dear HUMAnN users: HUMAnN 4.0 (alpha) has arrived! Many thanks for your patience—we know there have been a lot of users looking forward to this release for a long time. Since a lot is changing in this version, we’re tryi…

1

907

October 30, 2024

Announcing HUMAnN 3.7

Summary: HUMAnN 3.7 enables tiered search using MetaPhlAn 4’s recently updated marker database (October 2022 version) and the bioBakery 3.1 pangenome catalog. What has changed in HUMAnN 3.7: HUMAnN 3.7 maps MetaPhl…