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Metaphlan4 species not included in Humann3.5 output?
|
|
3
|
95
|
February 6, 2023
|
|
Using MetaPhlAn4 & HUMAnN 3.0 for mouse gut microbiome
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|
0
|
8
|
February 7, 2023
|
|
Metaphlan V4.0.2 and Huma 3.6: MetaPhlAn taxonomic profile provided was not generated with the expected database
|
|
14
|
282
|
February 6, 2023
|
|
Humann for soil metagenomics
|
|
1
|
17
|
February 6, 2023
|
|
No MetaPhlAn BowTie2 database found (--index option)!
|
|
22
|
3463
|
February 6, 2023
|
|
Got "local variable 'MINimum' referenced before assignment" while running
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|
1
|
37
|
January 24, 2023
|
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What is about the new pathcoverage
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|
3
|
156
|
January 24, 2023
|
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Normalization method and when the microorganism to be reported does not exist
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1
|
33
|
January 24, 2023
|
|
Availabilty of mapping NCBI TaxID to Species name
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4
|
37
|
January 24, 2023
|
|
Low mapping rates, humann, shallow shotgun
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2
|
71
|
January 24, 2023
|
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Error in demo code, can-not-find-file-metaphlan-bugs-list?
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|
1
|
29
|
January 24, 2023
|
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Humann uses outdated uniref50 mapping file for mapping Uniref50 ids to names by default
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|
2
|
50
|
January 24, 2023
|
|
Transform pathway result
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2
|
44
|
January 24, 2023
|
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Add ncbi TaxID to Humann3 output
|
|
1
|
1025
|
January 24, 2023
|
|
Humann3 Paired end reads
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|
7
|
2235
|
January 24, 2023
|
|
Any HUMANN databases specifically designed for marine habitats?
|
|
1
|
36
|
January 24, 2023
|
|
utf-8 decode error while running humann_join_tables: reading hidden files on osx
|
|
1
|
26
|
January 24, 2023
|
|
Marine Samples (Environmental samples) and disk space
|
|
1
|
68
|
January 24, 2023
|
|
Obtain the pathway abundance file for some specific EC
|
|
1
|
78
|
January 24, 2023
|
|
HUMANN 3.0 function downstream analysis
|
|
3
|
317
|
January 16, 2023
|
|
Humann3 metatranscriptome analysis stuck at nucleotide alignment post processing
|
|
10
|
151
|
January 9, 2023
|
|
Humann 3.6 --resume
|
|
2
|
101
|
December 15, 2022
|
|
No MetaPhlAn BowTie2 database found (--index option)! Humann3.6
|
|
4
|
233
|
December 15, 2022
|
|
Problems running HUMAnN3.6 - MetaPhlan database error
|
|
1
|
111
|
December 15, 2022
|
|
Mapping MetaCyc Pathways
|
|
5
|
117
|
December 15, 2022
|
|
Humann2_regroup_table for kegg : UNGROUPED!
|
|
3
|
101
|
December 15, 2022
|
|
One-to-many problem with humann2_regroup_table
|
|
8
|
1049
|
December 5, 2022
|
|
What is humann doing in the circled area?
|
|
7
|
197
|
December 1, 2022
|
|
Humann3/Chocophlan and metaphlan3 databases compatible?
|
|
4
|
422
|
December 1, 2022
|
|
Humann2 input tsv file format
|
|
1
|
53
|
December 1, 2022
|