HUMAnN

Topic	Replies	Views	Activity
Release notes for HUMAnN 3.0.0 and ChocoPhlAn 201901b Hi All - HUMAnN 3.0.0 has been out in the wild for a little while now, but I was slow in getting these release notes together. Please reply with any questions. Thanks! -Eric Introduction HUMAnN 3.0.0 is a major upda…	4	189	October 14, 2021
About the Humann2 category	0	397	October 25, 2019
Generate pathabundance and pathcoverage only	0	14	November 29, 2021
Humann3 installation	1	31	November 26, 2021
Example for `File Type 4 (gene table) tsv` as input to HUMAnN?	1	25	November 25, 2021
Demo.fastq.gz fail to produce the result	0	6	November 25, 2021
Humann3 zero species selected from prescreen	0	20	November 24, 2021
Can we increase the percent identity threshold for metaplan when running humann3	0	10	November 20, 2021
LeFse analyis-cladogram	0	22	November 17, 2021
Profiling of marine species Alcanivorax sp N3 2A	6	72	November 11, 2021
Humann3 --search-mode problem	4	30	November 9, 2021
Discrepancy between metaphlan3 community profile and humann3 gene families	3	92	November 9, 2021
Humann3 error with metaphlan	8	68	November 8, 2021
CRITICAL ERROR: translated database uniref50_20190	4	36	November 8, 2021
HumanN2 Databases on VirtualBox VM	1	25	November 5, 2021
HUMAnN 3.0 optional and required reactions in pathway	3	100	November 5, 2021
Installing older version of humann3	1	39	November 5, 2021
Annotate predicted gene sequences	1	30	November 5, 2021
Uniref90 Gene Families to Pathways	1	41	November 5, 2021
HUMAnN3 Diamond Cannot Find tmp file	1	32	November 5, 2021
No MetaPhlAn BowTie2 database found (--index option)!	7	792	November 4, 2021
No species were selected from the prescreen. Because of this the custom ChocoPhlAn database is empty. This will result in zero species-specific gene families and pathways	5	632	October 22, 2021
Different chocophlan databases?	4	1154	October 18, 2021
How to do CAZy gene profiling?	2	80	October 15, 2021
Humann3 hanging during run, no error messages but no changes to output, log or temp files	20	134	October 14, 2021
Time of analysis questions	1	49	October 14, 2021
uniprotID mapping to Gene Ontology	1	40	October 14, 2021
Is the renorm step affected by what samples are included together	2	351	October 12, 2021
Humann3 out of range error reading Metaphlan3 output	1	41	October 5, 2021
Human_test failed with Minpath and Xipe off	2	49	October 1, 2021

Release notes for HUMAnN 3.0.0 and ChocoPhlAn 201901b

Hi All - HUMAnN 3.0.0 has been out in the wild for a little while now, but I was slow in getting these release notes together. Please reply with any questions. Thanks! -Eric Introduction HUMAnN 3.0.0 is a major upda…