HUMAnN

Topic	Replies	Views	Activity
Announcing HUMAnN 4.0 (alpha) Dear HUMAnN users: HUMAnN 4.0 (alpha) has arrived! Many thanks for your patience—we know there have been a lot of users looking forward to this release for a long time. Since a lot is changing in this version, we’re tryi…	1	647	October 30, 2024
Announcing HUMAnN 3.7 Summary: HUMAnN 3.7 enables tiered search using MetaPhlAn 4’s recently updated marker database (October 2022 version) and the bioBakery 3.1 pangenome catalog. What has changed in HUMAnN 3.7: HUMAnN 3.7 maps MetaPhl…	3	2354	May 4, 2023
Pyrhon version issue of HUMAnN4.0.0a	0	1	January 16, 2025
Error running metaphlan and humann	0	11	January 10, 2025
HUMAnN: Unable to convert gene table value to float	0	7	December 11, 2024
Humann4 fails identify protein from demo input	2	46	January 8, 2025
CRITICAL ERROR: Can not call software version for diamond	3	12	January 8, 2025
No pathways detected with --input-format genetable	2	13	January 8, 2025
MinPath12hmp.py:804 error humann3	6	34	January 5, 2025
Broken pipe with 48 threads and 98 Gb of RAM	2	23	January 5, 2025
HUMAnN database download	24	1005	January 3, 2025
Can you compare separate HUManN runs?	7	71	January 2, 2025
HUMAnN4 alpha demo.fastq file not working	1	30	January 2, 2025
Humans database	6	238	January 2, 2025
How do I find the metaphlan vOct22 chocophlan database for Humann?	2	30	January 2, 2025
MetaPhlAn no relative abundance hnn4	2	35	December 20, 2024
Example for `File Type 4 (gene table) tsv` as input to HUMAnN?	2	481	December 10, 2024
MetaCyc pathway hierarchical structure like KEGG pathway map file?	12	2518	December 5, 2024
MetaCyc hierarchy to invetigate/identify specific pathways	16	3057	December 5, 2024
How to do CAZy gene profiling?	9	1518	November 28, 2024
MinPath on and off	0	11	November 27, 2024
Issue with Humann4 diamond run	0	24	November 25, 2024
Question about humann 3.9 and vJun23_202403	4	67	November 22, 2024
Humann 4.0 alpha in workflow	2	89	November 18, 2024
Bowtie2 unaligned reads slow	14	1924	November 8, 2024
Calculating pathway abundances from modified RXN/UniRef90 files	1	20	November 8, 2024
Humann/MetaPhlAn - The metaphlan executable can not be found	4	35	November 7, 2024
Humann error concerning metaphanand databases	2	50	November 4, 2024
KEGG Orthogroups count output	2	25	October 31, 2024
Deseq2 analysis of Humann3 outputs - clarification	3	62	October 30, 2024

Announcing HUMAnN 4.0 (alpha)

Dear HUMAnN users: HUMAnN 4.0 (alpha) has arrived! Many thanks for your patience—we know there have been a lot of users looking forward to this release for a long time. Since a lot is changing in this version, we’re tryi…

1

647

October 30, 2024

Announcing HUMAnN 3.7

Summary: HUMAnN 3.7 enables tiered search using MetaPhlAn 4’s recently updated marker database (October 2022 version) and the bioBakery 3.1 pangenome catalog. What has changed in HUMAnN 3.7: HUMAnN 3.7 maps MetaPhl…