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Humann3 Database errors
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7
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197
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December 8, 2025
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HUMAnN (v3.6) a new db update issue - CHOCOPhlAnSGB_202103
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6
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172
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December 7, 2025
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How to silence database download message from Metaphlan 4.0.6 within Humann 3.8
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4
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176
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December 7, 2025
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HUMAnN 4 prescreen issue and input file format clarification
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2
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72
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December 7, 2025
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Combine Output from Separate Runs of Single Sample
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3
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80
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December 5, 2025
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Trouble running HUMAnN with updated metaphlan database
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3
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282
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December 5, 2025
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Humann4 not recognizing relab column in metaphlan4 table
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1
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66
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December 5, 2025
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Zero community-level pathways detected despite gene families present
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1
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52
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December 5, 2025
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Absent tryptophan pathway in all metagenomic results
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1
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39
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December 5, 2025
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Humann=4.0.0a1 : MinPath12hmp.py:804: SyntaxWarning
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1
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67
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December 5, 2025
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HUMAnN 3.0 stratified KOs return paradoxical interpretations
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1
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75
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December 4, 2025
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Humann biocontainer: Unable to write to the HUMAnN config file
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3
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786
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November 14, 2025
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How should I compare HUMAnN 4 “Counts” from concatenated paired-end reads to known species read abundances?
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3
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119
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November 6, 2025
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Unable to download the databases in Humann4
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1
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150
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November 4, 2025
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Optimal thread count for KneadData, Bowtie2, MetaPhlAn, and HUMAnN on multi-core systems
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1
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87
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November 4, 2025
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Downloading humann from HPC cluster
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1
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55
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November 4, 2025
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Big differences in results depending on type of mapping used?
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5
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182
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November 4, 2025
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Humann3 does not recognize "relative abundance" in metaphlan profile file
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8
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1028
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November 4, 2025
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Discrepancies in prescreen.py script
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1
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20
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November 4, 2025
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MetaPhlAn 4.2.2 work with humann v3.0.1
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8
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405
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October 22, 2025
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Using Kraken2 with Humann3
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5
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664
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October 8, 2025
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Problems running Humann
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2
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105
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September 25, 2025
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ERROR: The MetaPhlAn taxonomic profile provided was not generated with the expected database version. Please update your version of MetaPhlAn to at least v3.0
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1
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168
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September 25, 2025
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MetaPhlAn / CHOCOPhlAn version mismatch while doing humann 3 analysis
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1
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93
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September 23, 2025
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Can't load databases
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5
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77
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September 23, 2025
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Errors with humann-metaphlan
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2
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159
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September 23, 2025
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Ultima sequencing with BioBakery tools
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1
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37
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September 19, 2025
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HUMAnN 4.2 for long read data
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7
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208
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September 6, 2025
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Missing relative abundance and coverage error for humann4a
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2
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145
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August 29, 2025
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Humann v3.8 misinterprets non-default analysis types, ie "-t rel_ab_w_read_stats", results from metaphlan 4.1
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4
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103
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August 28, 2025
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