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Humann3 --metaphlan-options error
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0
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37
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February 18, 2026
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READS_UNMAPPED Is Not Presented in CPM Format
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2
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172
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February 18, 2026
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Dereplicating and normalizing reads for humann and metaphlan
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6
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146
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January 30, 2026
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Failure Downloading HUMAnN UniRef90 DIAMOND Database via WSL
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0
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15
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January 28, 2026
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Glitch in humann4 genefamilies file creation
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0
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39
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January 15, 2026
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No SGBs in humann3.9 genefamily.tsv
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2
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59
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January 12, 2026
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Pathway abundance stratification
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0
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50
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January 9, 2026
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How to handle transferred and split EC numbers in humann outputs
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1
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34
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January 9, 2026
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HUMAnN targeted functional analysis?
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2
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154
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January 9, 2026
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Humann (v3.9) returning 100% unaligned reads on demo data
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1
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61
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January 9, 2026
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Humann3 Database errors
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7
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262
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December 8, 2025
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HUMAnN (v3.6) a new db update issue - CHOCOPhlAnSGB_202103
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6
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215
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December 7, 2025
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How to silence database download message from Metaphlan 4.0.6 within Humann 3.8
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4
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214
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December 7, 2025
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HUMAnN 4 prescreen issue and input file format clarification
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2
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98
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December 7, 2025
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Combine Output from Separate Runs of Single Sample
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3
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136
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December 5, 2025
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Trouble running HUMAnN with updated metaphlan database
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3
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344
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December 5, 2025
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Humann4 not recognizing relab column in metaphlan4 table
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1
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106
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December 5, 2025
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Zero community-level pathways detected despite gene families present
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1
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66
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December 5, 2025
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Absent tryptophan pathway in all metagenomic results
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1
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54
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December 5, 2025
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Humann=4.0.0a1 : MinPath12hmp.py:804: SyntaxWarning
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1
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92
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December 5, 2025
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HUMAnN 3.0 stratified KOs return paradoxical interpretations
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1
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99
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December 4, 2025
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Humann biocontainer: Unable to write to the HUMAnN config file
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3
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818
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November 14, 2025
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How should I compare HUMAnN 4 “Counts” from concatenated paired-end reads to known species read abundances?
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3
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151
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November 6, 2025
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Unable to download the databases in Humann4
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1
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186
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November 4, 2025
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Optimal thread count for KneadData, Bowtie2, MetaPhlAn, and HUMAnN on multi-core systems
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1
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111
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November 4, 2025
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Downloading humann from HPC cluster
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1
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64
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November 4, 2025
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Big differences in results depending on type of mapping used?
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5
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228
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November 4, 2025
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Humann3 does not recognize "relative abundance" in metaphlan profile file
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8
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1069
|
November 4, 2025
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Discrepancies in prescreen.py script
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1
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35
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November 4, 2025
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MetaPhlAn 4.2.2 work with humann v3.0.1
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8
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456
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October 22, 2025
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