|
Analyzing single end and paired end reads together?
|
|
0
|
29
|
February 20, 2026
|
|
Humann3 --metaphlan-options error
|
|
0
|
37
|
February 18, 2026
|
|
READS_UNMAPPED Is Not Presented in CPM Format
|
|
2
|
175
|
February 18, 2026
|
|
Dereplicating and normalizing reads for humann and metaphlan
|
|
6
|
154
|
January 30, 2026
|
|
Failure Downloading HUMAnN UniRef90 DIAMOND Database via WSL
|
|
0
|
16
|
January 28, 2026
|
|
Glitch in humann4 genefamilies file creation
|
|
0
|
40
|
January 15, 2026
|
|
No SGBs in humann3.9 genefamily.tsv
|
|
2
|
62
|
January 12, 2026
|
|
Pathway abundance stratification
|
|
0
|
51
|
January 9, 2026
|
|
How to handle transferred and split EC numbers in humann outputs
|
|
1
|
34
|
January 9, 2026
|
|
HUMAnN targeted functional analysis?
|
|
2
|
156
|
January 9, 2026
|
|
Humann (v3.9) returning 100% unaligned reads on demo data
|
|
1
|
62
|
January 9, 2026
|
|
Humann3 Database errors
|
|
7
|
264
|
December 8, 2025
|
|
HUMAnN (v3.6) a new db update issue - CHOCOPhlAnSGB_202103
|
|
6
|
222
|
December 7, 2025
|
|
How to silence database download message from Metaphlan 4.0.6 within Humann 3.8
|
|
4
|
218
|
December 7, 2025
|
|
HUMAnN 4 prescreen issue and input file format clarification
|
|
2
|
98
|
December 7, 2025
|
|
Combine Output from Separate Runs of Single Sample
|
|
3
|
142
|
December 5, 2025
|
|
Trouble running HUMAnN with updated metaphlan database
|
|
3
|
346
|
December 5, 2025
|
|
Humann4 not recognizing relab column in metaphlan4 table
|
|
1
|
106
|
December 5, 2025
|
|
Zero community-level pathways detected despite gene families present
|
|
1
|
68
|
December 5, 2025
|
|
Absent tryptophan pathway in all metagenomic results
|
|
1
|
54
|
December 5, 2025
|
|
Humann=4.0.0a1 : MinPath12hmp.py:804: SyntaxWarning
|
|
1
|
93
|
December 5, 2025
|
|
HUMAnN 3.0 stratified KOs return paradoxical interpretations
|
|
1
|
99
|
December 4, 2025
|
|
Humann biocontainer: Unable to write to the HUMAnN config file
|
|
3
|
820
|
November 14, 2025
|
|
How should I compare HUMAnN 4 “Counts” from concatenated paired-end reads to known species read abundances?
|
|
3
|
154
|
November 6, 2025
|
|
Unable to download the databases in Humann4
|
|
1
|
186
|
November 4, 2025
|
|
Optimal thread count for KneadData, Bowtie2, MetaPhlAn, and HUMAnN on multi-core systems
|
|
1
|
115
|
November 4, 2025
|
|
Downloading humann from HPC cluster
|
|
1
|
64
|
November 4, 2025
|
|
Big differences in results depending on type of mapping used?
|
|
5
|
232
|
November 4, 2025
|
|
Humann3 does not recognize "relative abundance" in metaphlan profile file
|
|
8
|
1074
|
November 4, 2025
|
|
Discrepancies in prescreen.py script
|
|
1
|
35
|
November 4, 2025
|