|
Find other samples with a same Species
|
|
3
|
71
|
March 11, 2024
|
|
Relative abundances not summing to 100
|
|
3
|
142
|
March 11, 2024
|
|
PhyloPhlAn database error during StrainPhlAn 4 run
|
|
11
|
688
|
March 8, 2024
|
|
Question about calculate_diversity.R
|
|
4
|
522
|
March 8, 2024
|
|
Not able to upgrade HumanN to version 3.9
|
|
6
|
127
|
March 7, 2024
|
|
The genefamily file has results, but there are no functional enrichment results in the pathcoverage.tsv and pathabundance.tsv files
|
|
3
|
102
|
March 7, 2024
|
|
Using Kraken2 with Humann3
|
|
3
|
199
|
March 7, 2024
|
|
MetaPhlAn4 overestimates the abundance of Veillonella rogosae
|
|
2
|
222
|
March 7, 2024
|
|
Unable to write to the HUMAnN config file in apptainer
|
|
0
|
49
|
March 7, 2024
|
|
Cannot download Chocophlan database
|
|
20
|
1264
|
March 6, 2024
|
|
Converting MetaPhlAn3 profiles to GTDB
|
|
1
|
180
|
March 6, 2024
|
|
I am not getting viruses abundance in MetaPhlAn4.1 using mpa_vJun23 database
|
|
1
|
92
|
March 5, 2024
|
|
Issue with running StrainPhlAn 4.1 - Error in running ample2markers.py
|
|
1
|
73
|
March 5, 2024
|
|
There have significant difference of abundance estimate using database_202103 or 202307
|
|
2
|
91
|
March 5, 2024
|
|
How does using --unclassified_estimation affect relative abundances of the classified portion of reads
|
|
1
|
127
|
March 5, 2024
|
|
Italicize labels in hclust2.py
|
|
2
|
64
|
March 5, 2024
|
|
Will MetaPhlAn work for microbiome, mycobiome and virome analysis?
|
|
1
|
118
|
March 5, 2024
|
|
Humann installation error
|
|
1
|
127
|
March 5, 2024
|
|
Merge_metaphlan_tables.py command not found
|
|
1
|
65
|
March 5, 2024
|
|
FTP Databases Server Contents Confusion
|
|
1
|
103
|
March 5, 2024
|
|
Auto-updating database seems to break MetaPhlAn4
|
|
1
|
71
|
March 5, 2024
|
|
[Issue] --nreads parameter when running MetaPhlAn using SAM files as input
|
|
2
|
136
|
March 5, 2024
|
|
Metaphlan4 estimated_number_of_reads
|
|
1
|
178
|
March 5, 2024
|
|
ValueError: Number of passed names did not match number of header fields in the file
|
|
3
|
744
|
March 5, 2024
|
|
No output after running MetaPhlAn
|
|
2
|
364
|
March 5, 2024
|
|
Ignore_markers how to use
|
|
1
|
117
|
March 5, 2024
|
|
What are the number of species under each genes in MetaPhlAn Database?
|
|
1
|
164
|
March 5, 2024
|
|
Metaphlan does not creating txt file only bowtie file
|
|
2
|
134
|
March 5, 2024
|
|
How to know unaligned reads when runing Metaphlan4
|
|
1
|
151
|
March 5, 2024
|
|
Merge_metaphlan_tables.py error
|
|
1
|
187
|
March 5, 2024
|