Hi MetaPhlAn developers,
I am using MetaPhlan v. 4.0.6 (mpa_vOct22_CHOCOPhlAnSGB_202212 database) to perform taxonomic profiling of the mock community “ZymoBIOMICS Gut Microbiome Standard D6331”
The relative abundance I obtain for Veillonella rogosae is much higher than expected, 34% vs. 14%, and I am wondering what the issue can be.
I have provided the MetaPhlan4 output file:
Zymo_D6331.metaphlan4.txt (18.6 KB)
Let me know if you need further information and thank you for hopefully looking into this.