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About the ShortBRED category
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0
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671
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November 12, 2019
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ShortBRED Identify and CARD 2023
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2
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369
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March 29, 2026
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VFDB marker details
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0
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21
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January 8, 2026
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Question about "X" in marker sequences from shortbred_identify.py
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0
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27
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August 26, 2025
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Shortbred default parameter inconsistency
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1
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58
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June 27, 2025
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Shortbred has been running for more than one day and not stopped, is that normal?
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0
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44
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March 3, 2025
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Shortbred makeblastdb issue
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0
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58
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January 20, 2025
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In shortbred_identify.py, can Diamond be used to replace BLASTP as an alignment software?
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0
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146
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February 29, 2024
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ShortBRED yields zero hits for ALL samples
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0
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143
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February 22, 2024
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ShortBRED run failed due to <Signals.SIGBUS: 7>
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0
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176
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February 20, 2024
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ShortBRED CalledProcessErrror & KeyError
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1
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221
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February 2, 2024
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ShortBRED for Nanopore data
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3
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306
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October 20, 2023
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MUSCLE in ShortBRED
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4
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465
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September 5, 2023
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Shortbred_quantify unrecognized arguments error
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0
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289
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June 16, 2023
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The protein of interest
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0
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271
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June 14, 2023
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Protein of interest
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0
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334
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June 12, 2023
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Nitrogen markers with ShortBRED Identify
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2
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349
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May 23, 2023
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Acceptable file inputs for ShortBRED Quantify
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1
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430
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May 22, 2023
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AttributeError: 'NoneType' object has no attribute 'group' running shortbred_quantify.py
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3
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564
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March 21, 2023
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Shortbred error 0 reads in file
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2
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463
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January 8, 2023
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Combining Shortbred outputs?
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1
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507
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July 26, 2022
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Error running ShortBRED tutorial example
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1
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545
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July 8, 2022
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Wordparams.cpp(171) assert failed: MinFractId >= 0.0 && MinFractId <= 1.0
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1
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337
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July 1, 2022
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Which ORF was identified as a hit?
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0
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291
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June 5, 2022
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Error with usearch
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2
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1095
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May 11, 2022
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Shortbred warming usearch error
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0
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431
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May 10, 2022
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Interpreting Output - one hit set for 2 proteins
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0
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355
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May 6, 2022
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ShortBRED key error 'unassigned'
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1
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405
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March 25, 2022
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Virulence Factor Annotations
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2
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715
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March 16, 2022
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Site-package __init__.py Error "Unknown format"
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2
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664
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February 28, 2022
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