|
About the ShortBRED category
|
|
0
|
411
|
November 12, 2019
|
|
Nitrogen markers with ShortBRED Identify
|
|
2
|
35
|
May 23, 2023
|
|
Acceptable file inputs for ShortBRED Quantify
|
|
1
|
19
|
May 22, 2023
|
|
AttributeError: 'NoneType' object has no attribute 'group' running shortbred_quantify.py
|
|
3
|
210
|
March 21, 2023
|
|
Shortbred error 0 reads in file
|
|
2
|
232
|
January 8, 2023
|
|
Combining Shortbred outputs?
|
|
1
|
213
|
July 26, 2022
|
|
Error running ShortBRED tutorial example
|
|
1
|
174
|
July 8, 2022
|
|
Wordparams.cpp(171) assert failed: MinFractId >= 0.0 && MinFractId <= 1.0
|
|
1
|
133
|
July 1, 2022
|
|
Which ORF was identified as a hit?
|
|
0
|
101
|
June 5, 2022
|
|
Error with usearch
|
|
2
|
696
|
May 11, 2022
|
|
Shortbred warming usearch error
|
|
0
|
186
|
May 10, 2022
|
|
Interpreting Output - one hit set for 2 proteins
|
|
0
|
190
|
May 6, 2022
|
|
ShortBRED key error 'unassigned'
|
|
1
|
242
|
March 25, 2022
|
|
Virulence Factor Annotations
|
|
2
|
342
|
March 16, 2022
|
|
Site-package __init__.py Error "Unknown format"
|
|
2
|
390
|
February 28, 2022
|
|
Which file contains the final results?
|
|
0
|
151
|
February 10, 2022
|
|
Handling Paired-End Reads in ShortBRED
|
|
3
|
336
|
February 8, 2022
|
|
Precomputed SHORTBRED markers for dbCAN?
|
|
0
|
192
|
January 11, 2022
|
|
ShortBRED identify gives no markers
|
|
3
|
511
|
January 4, 2022
|
|
Shortbred returns all zero count
|
|
1
|
278
|
November 5, 2021
|
|
Specifying strands in USEARCH within shortbred_quantify
|
|
4
|
438
|
October 24, 2021
|
|
ShortBRED installation/dependency errors
|
|
3
|
978
|
March 22, 2021
|
|
How to add description information?
|
|
4
|
356
|
September 16, 2021
|
|
UniRef90 or UniRef100 for building markers with ShortBRED-Identify?
|
|
2
|
360
|
July 9, 2021
|
|
Fastq.gz file as input for ShortBRED?
|
|
2
|
473
|
June 4, 2021
|
|
Fatal Error: not enough memory, please set -M option greater than 1240
|
|
1
|
579
|
April 29, 2021
|
|
Non-printing character 0x00 in sequence FASTA file ERROR
|
|
9
|
378
|
April 27, 2021
|
|
Blast db build fail
|
|
1
|
1005
|
March 25, 2021
|
|
Reverse "normalize by number of reads in the sample"
|
|
0
|
224
|
March 19, 2021
|
|
CARD pre-built marker
|
|
1
|
379
|
March 15, 2021
|