|
About the ShortBRED category
|
|
0
|
669
|
November 12, 2019
|
|
ShortBRED Identify and CARD 2023
|
|
2
|
351
|
March 29, 2026
|
|
VFDB marker details
|
|
0
|
14
|
January 8, 2026
|
|
Question about "X" in marker sequences from shortbred_identify.py
|
|
0
|
23
|
August 26, 2025
|
|
Shortbred default parameter inconsistency
|
|
1
|
56
|
June 27, 2025
|
|
Shortbred has been running for more than one day and not stopped, is that normal?
|
|
0
|
40
|
March 3, 2025
|
|
Shortbred makeblastdb issue
|
|
0
|
47
|
January 20, 2025
|
|
In shortbred_identify.py, can Diamond be used to replace BLASTP as an alignment software?
|
|
0
|
143
|
February 29, 2024
|
|
ShortBRED yields zero hits for ALL samples
|
|
0
|
138
|
February 22, 2024
|
|
ShortBRED run failed due to <Signals.SIGBUS: 7>
|
|
0
|
173
|
February 20, 2024
|
|
ShortBRED CalledProcessErrror & KeyError
|
|
1
|
219
|
February 2, 2024
|
|
ShortBRED for Nanopore data
|
|
3
|
293
|
October 20, 2023
|
|
MUSCLE in ShortBRED
|
|
4
|
463
|
September 5, 2023
|
|
Shortbred_quantify unrecognized arguments error
|
|
0
|
289
|
June 16, 2023
|
|
The protein of interest
|
|
0
|
269
|
June 14, 2023
|
|
Protein of interest
|
|
0
|
334
|
June 12, 2023
|
|
Nitrogen markers with ShortBRED Identify
|
|
2
|
342
|
May 23, 2023
|
|
Acceptable file inputs for ShortBRED Quantify
|
|
1
|
424
|
May 22, 2023
|
|
AttributeError: 'NoneType' object has no attribute 'group' running shortbred_quantify.py
|
|
3
|
554
|
March 21, 2023
|
|
Shortbred error 0 reads in file
|
|
2
|
460
|
January 8, 2023
|
|
Combining Shortbred outputs?
|
|
1
|
505
|
July 26, 2022
|
|
Error running ShortBRED tutorial example
|
|
1
|
543
|
July 8, 2022
|
|
Wordparams.cpp(171) assert failed: MinFractId >= 0.0 && MinFractId <= 1.0
|
|
1
|
336
|
July 1, 2022
|
|
Which ORF was identified as a hit?
|
|
0
|
290
|
June 5, 2022
|
|
Error with usearch
|
|
2
|
1091
|
May 11, 2022
|
|
Shortbred warming usearch error
|
|
0
|
423
|
May 10, 2022
|
|
Interpreting Output - one hit set for 2 proteins
|
|
0
|
354
|
May 6, 2022
|
|
ShortBRED key error 'unassigned'
|
|
1
|
405
|
March 25, 2022
|
|
Virulence Factor Annotations
|
|
2
|
704
|
March 16, 2022
|
|
Site-package __init__.py Error "Unknown format"
|
|
2
|
663
|
February 28, 2022
|