About the ShortBRED category
|
|
0
|
640
|
November 12, 2019
|
Shortbred default parameter inconsistency
|
|
1
|
13
|
June 27, 2025
|
Shortbred has been running for more than one day and not stopped, is that normal?
|
|
0
|
22
|
March 3, 2025
|
Shortbred makeblastdb issue
|
|
0
|
20
|
January 20, 2025
|
In shortbred_identify.py, can Diamond be used to replace BLASTP as an alignment software?
|
|
0
|
121
|
February 29, 2024
|
ShortBRED yields zero hits for ALL samples
|
|
0
|
125
|
February 22, 2024
|
ShortBRED run failed due to <Signals.SIGBUS: 7>
|
|
0
|
164
|
February 20, 2024
|
ShortBRED CalledProcessErrror & KeyError
|
|
1
|
204
|
February 2, 2024
|
ShortBRED Identify and CARD 2023
|
|
1
|
321
|
January 23, 2024
|
ShortBRED for Nanopore data
|
|
3
|
258
|
October 20, 2023
|
MUSCLE in ShortBRED
|
|
4
|
431
|
September 5, 2023
|
Shortbred_quantify unrecognized arguments error
|
|
0
|
280
|
June 16, 2023
|
The protein of interest
|
|
0
|
261
|
June 14, 2023
|
Protein of interest
|
|
0
|
331
|
June 12, 2023
|
Nitrogen markers with ShortBRED Identify
|
|
2
|
331
|
May 23, 2023
|
Acceptable file inputs for ShortBRED Quantify
|
|
1
|
382
|
May 22, 2023
|
AttributeError: 'NoneType' object has no attribute 'group' running shortbred_quantify.py
|
|
3
|
534
|
March 21, 2023
|
Shortbred error 0 reads in file
|
|
2
|
446
|
January 8, 2023
|
Combining Shortbred outputs?
|
|
1
|
494
|
July 26, 2022
|
Error running ShortBRED tutorial example
|
|
1
|
526
|
July 8, 2022
|
Wordparams.cpp(171) assert failed: MinFractId >= 0.0 && MinFractId <= 1.0
|
|
1
|
320
|
July 1, 2022
|
Which ORF was identified as a hit?
|
|
0
|
278
|
June 5, 2022
|
Error with usearch
|
|
2
|
1069
|
May 11, 2022
|
Shortbred warming usearch error
|
|
0
|
411
|
May 10, 2022
|
Interpreting Output - one hit set for 2 proteins
|
|
0
|
344
|
May 6, 2022
|
ShortBRED key error 'unassigned'
|
|
1
|
390
|
March 25, 2022
|
Virulence Factor Annotations
|
|
2
|
668
|
March 16, 2022
|
Site-package __init__.py Error "Unknown format"
|
|
2
|
642
|
February 28, 2022
|
Which file contains the final results?
|
|
0
|
310
|
February 10, 2022
|
Handling Paired-End Reads in ShortBRED
|
|
3
|
599
|
February 8, 2022
|